Gene Information

Name : SeD_A2305 (SeD_A2305)
Accession : YP_002216062.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2188380 - 2189654 bp
Length : 1275 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence : 
ATGTCACTTACTGATACCAAAGTAAAAAATACCAGACCATCGGAAAAGGCCGTCAAGCTCACTGACGGGTTTGGCCTCTA
TCTGCTGGTGCATCCTAACGGTTCAAAATACTGGCAGTTAGGCTATCGCTTTGATGGCAAACAGAAGGTGTTTTCCATTG
GGGTTTACCCTGCGGTTTCACTTGCCGATGCCAGACAACGCCGGGACGAGGCCAAAAGGCTGCTGGCTCAGGGGATTGAC
CCGAACGCTAAAAAACAGGCTGATGAAAAAGTCCTTCAGGAGAAGCGGGATAAAACCCGCTCGTTCCGTGTCGTCGCCAA
AAGCTGGTTTGCCACCAAAACAAAATGGTCAGAAGATTACGCCGATACTGTCTGGAAGCGCCTTGAAACCTATGTCTTCC
CGGATATAGGCGACAGAAACGTTTCAGAACTGGATACGGGTGATCTGCTTGTCCCGGTCAAAAAAGCGGAAACACTCGGC
TACCTTGAAATTGCCATGCGGATTAAGCAATACATCACCGCGATCCTACGTCATGCCGTCCAGCAAAAGCTTATGCGTCA
TAATCCGGCCTATGATATGGAAGGCGCTGTCCAGAAACCAGAGACGGAACACCGCCCTGCACTGGAGCTGGAAGAGATCC
CGCTACTGCTTGAACGTATTGATGCCTACAAAGGTCGTGGACTGACTACGCTAGCGATTAAACTCAATCTGCTGATCTTC
ATTCGTTCCAGCGAACTTCGTTTCGCCCGGTGGTCGGAAATCGACTTCAAAAGTAAGTTATGGGTGATCCCCGAACAGCG
GGAAGCGATTGAAAACGTCAAGCACTCGACTCGTGGGGCTAAAATGAAACGTCAGCACTTCGTTCCCCTTTGCAGGCAGG
CTCTCAAGATACTGAAAGAGATCCGCCAGCTTACCTATGAAGAAGGTAACGAAGCAGAATTAATTTTCACTGGCTGTTAT
GATTCATTCAAACCCATGAGTGAAAACACTATTAACAAGGCGCTACGTAAGATGGGCTATGACACCACACAGGACATCTG
CGGTCATGGTTTCCGCACACTGGCGTGTAGTGCCTTAATTGAGTCTGGTCTATGGTCAGAAGATGCTGTAGAGCTTCAAA
TGAGCCATAAGGAAAGTAACAGCGTTCGCGCAGCCTATCCCCATAAGGCCAAGCATCTTGACCAACGCCGCCTGATGCTC
CAGTGGTGGGCTGATTTTCTTGATGAGAATCGGTATGAGATGGTCAGGCCGTTTGAGTTTGCTCAGAAACAATAA

Protein sequence : 
MSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVSLADARQRRDEAKRLLAQGID
PNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLG
YLEIAMRIKQYITAILRHAVQQKLMRHNPAYDMEGAVQKPETEHRPALELEEIPLLLERIDAYKGRGLTTLAIKLNLLIF
IRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKEIRQLTYEEGNEAELIFTGCY
DSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALIESGLWSEDAVELQMSHKESNSVRAAYPHKAKHLDQRRLML
QWWADFLDENRYEMVRPFEFAQKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 9e-111 61
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-110 57
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-112 57
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-111 57
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-111 57
int AAK00456.1 Int Not tested SHI-1 Protein 6e-104 57
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-111 57
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-112 57
int CAC81896.1 integrase Not tested LEE II Protein 1e-103 57
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-112 57
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-111 57
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-111 57
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-111 57
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-111 57
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-111 57
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-109 57
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-111 57
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-111 57
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-110 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-111 56
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 9e-111 56
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-106 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-106 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-110 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-68 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-93 51
int2 NP_993013.1 integrase Not tested HPI Protein 9e-97 50
int CAA21384.1 - Not tested HPI Protein 9e-97 50
int CAA08754.1 integrase Not tested HPI Protein 8e-97 50
int CAB59974.1 integrase Not tested HPI Protein 5e-97 50
int YP_002346908.1 integrase Not tested HPI Protein 9e-97 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 9e-97 50
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-97 50
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-97 50
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 7e-76 49
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-97 49
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-93 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A2305 YP_002216062.1 integrase VFG1536 Protein 5e-111 61
SeD_A2305 YP_002216062.1 integrase VFG0626 Protein 5e-112 57
SeD_A2305 YP_002216062.1 integrase VFG1693 Protein 9e-111 56