Gene Information

Name : SeD_A0023 (SeD_A0023)
Accession : YP_002213977.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 24973 - 25800 bp
Length : 828 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGTTACCGCGACGGCGACATTTAGCATGGTTTATTCCTGATTCCTTATCGGGATTTTTTTCTCGTCTGTTGGGAGGCGA
GAAAGGGGCGTTACGCGCGTCACTGCGCGTAACAAACCGACGGCATCAGGATATTACGCAGATGAAAAAAAACGTACCGA
TTTTCCTTCGATTATTGCTACTGCTGTCGGCGGCCGGCCTGTCGTTTGCCGTGCAGGCGGGAGGCATTGCGCTGGGCGCG
ACCAGGGTGATTTATCCGCAGGGAAGTAAGCAAACCTCCTTGCCGATTATTAATTCTTCTGCCAGCAATGTTTTTTTAAT
TCAGTCATGGGTCGCCAATGCCGATGGTTCACGCTCGACGGATTTTATCATTACGCCGCCTCTCTTTGTGATCCAGCCTA
AAAAAGAAAATATATTACGTATTATGTATGTCGGGCCGTCATTACCGACCGATCGCGAAAGCGTATTTTATTTAAACAGT
AAAGCGATACCCTCTGTCGATAAAAATAAATTGACCGGCAACTCCCTGCAAATTGCGACGCAAAGCGTGATTAAGCTATT
TATCCGCCCGAAAAATCTGGCGGAGGCGCCAGCTCATGCCCCGTCGACGCTTCGCTGCCGTAACGAGCGCGGCCAGCTAA
CGATTACTAACCCTTCGCCGTACTACGTTTCGATGGTTGAACTGTACAGCGCGGGGAAAAAACTGCCGAATACTATGGTA
CCGCCGAAAGGCGCGATCACTCTCCCGGCGACGCCCGGCCAGGTATCTTTGCGCACGGTAAACGATTTTGGCGCAACGAC
GCCAGCACGCGTTTGTCCAGCTTCATGA

Protein sequence : 
MLPRRRHLAWFIPDSLSGFFSRLLGGEKGALRASLRVTNRRHQDITQMKKNVPIFLRLLLLLSAAGLSFAVQAGGIALGA
TRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLPTDRESVFYLNS
KAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCRNERGQLTITNPSPYYVSMVELYSAGKKLPNTMV
PPKGAITLPATPGQVSLRTVNDFGATTPARVCPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 4e-44 50
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 1e-41 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A0023 YP_002213977.1 chaperone protein FimC VFG0445 Protein 8e-48 51
SeD_A0023 YP_002213977.1 chaperone protein FimC VFG0875 Protein 2e-45 51
SeD_A0023 YP_002213977.1 chaperone protein FimC VFG1644 Protein 6e-42 49
SeD_A0023 YP_002213977.1 chaperone protein FimC VFG0911 Protein 6e-42 49
SeD_A0023 YP_002213977.1 chaperone protein FimC VFG0455 Protein 6e-35 42