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Name : SeD_A0216 (SeD_A0216) Accession : YP_002214157.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : chaperone protein PapD Function : - COG functional category : N : Cell motility COG ID : COG3121 EC number : - Position : 231631 - 232383 bp Length : 753 bp Strand : + Note : identified by match to protein family HMM PF00345 DNA sequence : ATGATGTCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGTAGCGCCCAGGCCGCCAT CGCGCCCGATCGCACCCGCCTGGTGTTTCGCGGCGAAGATAAATCGATAAGCGTCGATCTGAAAAACGCCAACAGCAAAC TGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCGCCTTTAATCGTCGTCCCACCGGTC CAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGCGTCGCTCCCCCAGGATCGGGA AACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGCTGCAAATCGCCCTGCAAACGC GCATCAAAGTTTTTTACCGCCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCCTGGCAATACAAGATCACCCTTCAG CGTCAGGGCAATGGCTATCAGGTGAGCAATCCGACCGGTTACTACGTGGTGTTAAGCAACGCCAGCAACCGCATGGACGG CACACCAGCCAGAGGCTTTAGCCCTTTAGTGATTGCACCAAAAAGCAACGTGACGCTGGGAGGGGACGCCAGTGAATTAG GTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTTAACTGTACTGACAACAGTTGT GCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA Protein sequence : MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ RQGNGYQVSNPTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC AVDEAKSRKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfD | CAD42028.1 | PrfD protein | Virulence | PAI II 536 | Protein | 4e-48 | 45 |
| papD | YP_854253.1 | pilus assembly protein chaperone PapD | Virulence | PAI I APEC-O1 | Protein | 8e-48 | 45 |
| papD | AAZ04423.1 | P pilus chaperone | Virulence | PAI I APEC-O1 | Protein | 6e-48 | 45 |
| papD_2 | NP_757033.1 | PapD protein | Virulence | PAI II CFT073 | Protein | 1e-47 | 44 |
| papD | YP_002414014.1 | Chaperone protein PapD | Not tested | Not named | Protein | 1e-47 | 44 |
| papD | AAL67413.1 | PapD | Virulence | PAI II CFT073 | Protein | 8e-48 | 44 |
| pixD | CAE85158.1 | PixD protein | Not tested | PAI V 536 | Protein | 1e-48 | 44 |
| papD | NP_755464.1 | PapD protein | Virulence | PAI I CFT073 | Protein | 5e-43 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A0216 | YP_002214157.1 | chaperone protein PapD | VFG1547 | Protein | 2e-48 | 45 |
| SeD_A0216 | YP_002214157.1 | chaperone protein PapD | VFG0896 | Protein | 5e-48 | 44 |
| SeD_A0216 | YP_002214157.1 | chaperone protein PapD | VFG0885 | Protein | 2e-43 | 43 |
