Gene Information

Name : SeD_A2120 (SeD_A2120)
Accession : YP_002215891.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 2034170 - 2034727 bp
Length : 558 bp
Strand : -
Note : identified by match to protein family HMM PF06316

DNA sequence : 
ATGAAAAATATTATTTTATCCACTTTATTTATTACTACAAGCGTTTTGGTTGTAAATGTTGCACAGGCCGATACTAACGC
CTTTTCCGTGGGGTATGCACAAAGTAAAGTTCAGGATTTCAAAAATATCCGAGGGGTAAATGTGAAATACCGTTATGAGG
ATGACTCTCCGGTAAGTTTTATTTCCTCGCTAAGTTACTTATATGGAGACAGACAGGCTTCCGGGTCTGTTGAGCCTGAA
GGTATTCATTACCATGACAAGTTTGAGGTGAAGTACGGTTCTTTAATGGTTGGGCCAGCCTATCGATTGTCTGACAATTT
TTCGTTATACGCGCTGGCGGGTGTCGGCACGGTAAAGGCGACATTTAAAGAACATTCCACTCAGGATGGCGATTCTTTTT
CTAACAAAATTTCCTCAAGGAAAACGGGATTTGCCTGGGGCGCGGGTGTACAGATGAATCCGCTGGAGAATATCGTCGTC
GATGTTGGGTATGAAGGAAGCAACATCTCCTCTACAAAAATAAACGGCTTCAACGTCGGGGTTGGATACCGTTTCTGA

Protein sequence : 
MKNIILSTLFITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPE
GIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVV
DVGYEGSNISSTKINGFNVGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 4e-80 99
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 6e-28 47
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 2e-27 46
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 3e-28 45
pagC AGI37348.1 PagC Virulence OI-122 Protein 4e-20 43
pagC AGI37351.1 PagC Virulence OI-122 Protein 4e-20 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 1e-19 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 1e-19 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 4e-19 42
pagC AGI37337.1 PagC Virulence OI-122 Protein 1e-19 42
pagC AGI37342.1 PagC Virulence OI-122 Protein 1e-19 42
pagC AGI37344.1 PagC Virulence OI-122 Protein 1e-19 42
pagC AGI37346.1 PagC Virulence OI-122 Protein 1e-19 42
pagC AGI37350.1 PagC Virulence OI-122 Protein 1e-19 42
pagC AGI37341.1 PagC Virulence OI-122 Protein 4e-19 42
pagC AGI37349.1 PagC Virulence OI-122 Protein 4e-19 42
pagC AGI37343.1 PagC Virulence OI-122 Protein 7e-19 41
pagC AGI37353.1 PagC Virulence OI-122 Protein 7e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A2120 YP_002215891.1 virulence membrane protein PagC VFG0442 Protein 7e-39 55