|
Name : SeD_A1953 (SeD_A1953) Accession : YP_002215739.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : inner membrane protein Function : - COG functional category : S : Function unknown COG ID : COG3272 EC number : - Position : 1882898 - 1883857 bp Length : 960 bp Strand : + Note : identified by match to protein family HMM PF04463; match to protein family HMM PF08349 DNA sequence : ATGAATAACAAACCCGTAGTCGGCATTAGCGGATGTCTGACTGGCGCCACGGTACGCTTTGATGGCGGACATAAGCGTAT GGATTTTGTCATGAACTCTCTGGCGCCGTGGGTGGACTACAAACCGATCTGCCCGGAGGTGGCGATCGGCCTGCCCGTGC CTCGCCCTGCGCTGCGTCTTATCCAGACGACCTGTGGCGACATTCGGATGCGCTATAGCCATGCCCCGCACGATGACGTC ACCGAGCGAATGAATGCCTTTGCCGATCGGTTTCTGCCAACAATAGGCGAACTGGCGGGGTTTATTGTGTGTGCAAAATC GCCCAGTTGCGGAATGGAGCGCGTTCGCCTGTATGATGAAAAGGGTAACAGGGGCCGCAAAGCTGGCACGGGGCTGTTTA CCGCCGCGATGATGGACAAATATCCCTGGCTGCCGATAGAGGAAGATGGTCGCCTGCACGATCCGGTACTACGCGAGAAT TTCATCGCACGTATCTTCGCGCTACATGAATTAAATGCGCTACGCGCGCAGGGCTTGAGTCGTCACAGTTTGCTCGCGTT TCATAGCCGATACAAACTTCAGCTTCTCGCCCACCACCAGGCCGGCTACCGCGAAATTGGCCCTTTCGTCGCGCGTCTGC ATGAGTGGGGCGATCTGGATGCCTTCTTTGTCCGATACAGAGAAAAACTGATGGCTATCCTGCGCCACCCCGCTTCACGT AAAAATCACACCAATGTGCTGATGCATATCCAGGGCTATTTTCACCGCGCGTTGAACAGCAGGCAACGCGCGGAATTACG CGAGGTGATTCTCGGCTACCGGGCGGGCCAACTACCTATCCTGGCACCGTTAACGCTGCTGAAGCACTATCTGGCGGAAC ATCCAGATGACTATCTACGCAGCCAGAATTATTTTGAGCCGTACCCTGATACGTTAGGGCTGCGCTTAGCCATCACCTGA Protein sequence : MNNKPVVGISGCLTGATVRFDGGHKRMDFVMNSLAPWVDYKPICPEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDV TERMNAFADRFLPTIGELAGFIVCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWGDLDAFFVRYREKLMAILRHPASR KNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAGQLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SC1410 | YP_216397.1 | inner membrane protein | Not tested | SPI-2 | Protein | 4e-152 | 99 |
| ORF 319 | CAB37410.1 | - | Not tested | SPI-2 | Protein | 5e-152 | 99 |
| STY1731 | NP_456139.1 | putative pathogenicity island protein | Not tested | SPI-2 | Protein | 9e-152 | 99 |
| t1257 | NP_805060.1 | pathogenicity island protein | Not tested | SPI-2 | Protein | 9e-152 | 99 |
| orf319 | NP_460354.1 | inner membrane protein | Not tested | SPI-2 | Protein | 6e-152 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A1953 | YP_002215739.1 | inner membrane protein | VFG0490 | Protein | 3e-152 | 99 |
