Gene Information

Name : SeD_A1946 (SeD_A1946)
Accession : YP_002215734.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : YseE family type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1874650 - 1874883 bp
Length : 234 bp
Strand : -
Note : identified by match to protein family HMM TIGR02501

DNA sequence : 
TTGACCCGGTTAGAAGATTTGCTGCTTCATTCGCGTGAAGAGGCCAAAGGCATAATTTTACAATTAAGGGCTGCCCGGAA
ACAGTTAGAAGAGAACAACGGCAAGTTACAGGATCCGCAGCAATATCAGCAAAACACCTTATTGCTTGAAGCGATCGAGC
AGGCCGAAAATATCATCAACATTATTTATTATCGTTACCATAACAGCGCACTTGTAGTGAGTGAGCAAGAGTAA

Protein sequence : 
MTRLEDLLLHSREEAKGIILQLRAARKQLEENNGKLQDPQQYQQNTLLLEAIEQAENIINIIYYRYHNSALVVSEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaE NP_460361.1 secretion system effector Virulence SPI-2 Protein 4e-18 99
ssaE AAC28877.1 putative secretory apparatus component Virulence SPI-2 Protein 3e-18 99
ssaE CAA12183.1 SsaE Virulence SPI-2 Protein 3e-18 99
ssaE NP_456132.1 putative secretion system protein Virulence SPI-2 Protein 7e-18 98
ssaE NP_805067.1 secretion system protein Virulence SPI-2 Protein 7e-18 98
ssaE YP_216404.1 secretion system effector protein SsaE Virulence SPI-2 Protein 1e-17 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1946 YP_002215734.1 YseE family type III secretion system protein VFG0497 Protein 1e-18 99