Gene Information

Name : SeD_A1942 (SeD_A1942)
Accession : YP_002215730.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : translocation machinery component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1870994 - 1871497 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCGATAT
CATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAAACAA
TTGATCAAGCGTTTAAAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGGGGCT
GTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGGCCGGTGT
AGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCCCTGA
CGGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGCTGAA
ATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMKTIDQAFKASMITAGGAMLSGVLTIGLGA
VGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKSLTDIMEKATEIMQQIIGVGSSLVTVLAE
ILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 1e-63 99
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 1e-63 99
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 2e-63 98
sseD AAC28882.1 SseD Virulence SPI-2 Protein 1e-62 98
sseD CAA12188.1 SseD Virulence SPI-2 Protein 1e-63 98
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 2e-61 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1942 YP_002215730.1 translocation machinery component VFG0502 Protein 4e-64 98