Gene Information

Name : SeD_A1940 (SeD_A1940)
Accession : YP_002215728.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 1870089 - 1870517 bp
Length : 429 bp
Strand : -
Note : identified by match to protein family HMM TIGR02552

DNA sequence : 
ATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGTTTATGC
CAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGTTGGCTGGTGATGGCCCAGCCAT
GGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTCTATGGA
CATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGAACCCGG
GTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGTTATGCGGATGCCTCATGGAGTGAGATTCGCCAGAATGCGC
AAATAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYG
HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 5e-62 100
sscB AAC28884.1 SscB Virulence SPI-2 Protein 4e-62 100
sscB CAA12190.1 SscB Virulence SPI-2 Protein 4e-62 100
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 5e-62 100
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 2e-61 99
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 2e-61 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1940 YP_002215728.1 type III secretion low calcium response chaperone LcrH/SycD VFG0504 Protein 2e-62 100