Gene Information

Name : SeD_A1936 (SeD_A1936)
Accession : YP_002215724.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : SsaH family type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1868028 - 1868318 bp
Length : 291 bp
Strand : -
Note : identified by match to protein family HMM TIGR02498

DNA sequence : 
GTGGAATCATTGCTAAAATCTGAAGTTATTAGCGACGATGTTCGACGGTTGCTGCTGGAAATCATGTTTGCGGGCGTTAA
CCATAGCCTGATTTCCCAGGTACATGCGATGTTACCAGCGCTAACGGTTATTGTTCCGGATAAAAAATTACAGTTGGTAT
GTCTGGCATTATTGTTGGCGGGTTTAAATGAGCCGCTAAAAGCCGCGAAAATTTTATCGGATATAGATTTGCCAGAGGCT
ATGGCGCTGCGTCTGTTATTTCCTGCACCAAATGAGGGGTTTGAAAATTGA

Protein sequence : 
MESLLKSEVISDDVRRLLLEIMFAGVNHSLISQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEPLKAAKILSDIDLPEA
MALRLLFPAPNEGFEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaH NP_460372.1 type III secretion system apparatus protein Virulence SPI-2 Protein 1e-16 100
ssaH YP_216415.1 secretion system apparatus protein SsaH Virulence SPI-2 Protein 3e-26 100
ssaH CAA12194.1 SsaH Virulence SPI-2 Protein 7e-17 100
ssaH AAX49621.1 SsaH Virulence SPI-2 Protein 7e-17 100
ssaH NP_456121.1 putative pathogenicity island protein Virulence SPI-2 Protein 1e-16 99
ssaH NP_805078.1 pathogenicity island protein Virulence SPI-2 Protein 1e-16 99
ssaI AAC28875.1 SsaI Virulence SPI-2 Protein 4e-16 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1936 YP_002215724.1 SsaH family type III secretion system protein VFG0508 Protein 3e-17 100