Gene Information

Name : epaR (SeD_A1922)
Accession : YP_002215711.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 1857614 - 1858393 bp
Length : 780 bp
Strand : -
Note : identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401

DNA sequence :
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTAAGCCTTTCTTTATTACTTCC
CCTATTAAAAAGTGGCAGTTTAGGGGCCGCTCTTTTACGTAATGGCGTGCTTATGTCACTTACCTTTCCCATATTACCAA
TCATTTACCAGCAGAAGATTATGATGCATATTGGTAAAGATTACAGTTGGTTAGGGTTAGTCACCGGAGAGGTGATTATT
GGTTTTTTAATTGGGTTTTGTGCGGCGGTTCCCTTTTGGGCCGTTGATATGGCGGGGTTTCTGCTTGATACTTTACGTGG
CGCGACAATGGGTACGATATTCAATTCTACAATAGAAGCTGAAACCTCACTTTTTGGCTTGCTTTTCAGCCAGTTTTTGT
GTGTTATTTTCTTTATAAGCGGCGGCATGGAGTTTATATTAAACATTCTGTATGAGTCATATCAATATTTACCACCAGGG
CGTACTTTATTATTTGACCGGCAATTTTTAAAATATATCCAGGCAGAGTGGAGAACGCTTTATCAATTATGTGTCAGTTT
CTCTCTTCCTGCCATAATATGTATGGTATTAGCCGATCTGGCTTTAGGTCTTTTAAATCGGTCGGCACAACAATTGAATG
TGTTTTTCTTCTCAATGCCGCTCAAAAGTATATTGGTTCTACTGACGCTCCTGATCTCATTCCCTTATGCTCTTCATCAC
TATTTGGTTGAAAGCGATAAATTTTATATTTATCTAAAAGACTGGTTTCCATCTGTATGA

Protein sequence :
MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVII
GFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
RTLLFDRQFLKYIQAEWRTLYQLCVSFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
YLVESDKFYIYLKDWFPSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-98 99
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 3e-98 99
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 7e-99 99
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 7e-99 99
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 3e-98 99
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 8e-45 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epaR YP_002215711.1 type III secretion apparatus protein SpaR/YscT/HrcT VFG0521 Protein 2e-98 99