Gene Information

Name : SeD_A1231 (SeD_A1231)
Accession : YP_002215083.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 1225500 - 1226003 bp
Length : 504 bp
Strand : -
Note : identified by match to protein family HMM PF05591

DNA sequence : 
ATGAGCAAAGATTATAACGGCAGCGTGGCACCCAAAGAACGCATTAATATTTCTTACATTCCAAAAACGGACGGTGAGCC
TTCTGAGGTGGAATTACCCCTTAATATGTTGATAGTGGGGGATACCGGAAACTCACAGGAAACAGCGCCACTTGATGAAC
GCCAGATGGTTTCTATCGACAAACATTCATTCAATTCAGTGATGGCAGAAGCGTCCATTAGCCTGAATTTTGCAGTTCCG
GCATCATTGAAGGACGACGCAAAAGATGGCGATGAGATGAATATCTCGCTGGAAATCAAATCCCTGAACGATTTTTCTCC
GGACAGCGTGGCAAAACAGGTACCGGAGTTGAACAAATTGCTGGAACTACGCGAAGCGCTGACAGCATTAAAAGGCCCGC
TCGGTAATCTGCCTGCATTTCGCGCCCAGCTTCAGGCATTGCTGGAAAATGAAGAATCCCGCGAACAGTTACTGCGGGAG
ATCAGCCAGGCAGAAAACCAGTAA

Protein sequence : 
MSKDYNGSVAPKERINISYIPKTDGEPSEVELPLNMLIVGDTGNSQETAPLDERQMVSIDKHSFNSVMAEASISLNFAVP
ASLKDDAKDGDEMNISLEIKSLNDFSPDSVAKQVPELNKLLELREALTALKGPLGNLPAFRAQLQALLENEESREQLLRE
ISQAENQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 9e-42 55
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 6e-42 55
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 2e-36 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1231 YP_002215083.1 type VI secretion protein VFG2092 Protein 1e-41 57
SeD_A1231 YP_002215083.1 type VI secretion protein VFG2474 Protein 1e-34 45