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Name : clpB (SeD_A1221) Accession : YP_002215073.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : chaperone protein clpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1213728 - 1216463 bp Length : 2736 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGATCCAGATTGACTTAGCCACCCTGGTAAAACGGCTTGCTCCCTTCGCGAAACAGGCGCTGGAAGCGGCGGCGTCGGA GTGTATGAGCCAGCAGGCGGCAGAAATTACCGTCGCGCATGTGCTGCTACAGATGCTGGCGACCCCGCGCAGCGACTTTC GGGTGATTGCCGAACGTGCGGAGATCGGCGCCGATGATTTACGCCAGGCGCTGACGGTGGAAAATTACGCCACCGCCCGT TCATCCGACAGCTACCCGTCGTTTTCCCCGATGCTGGTTGAATGGCTGAAAGAGGCCTGGCTGCTGGCCTCCGCGGAAAT GCAGCAGACCGAACTGCGCGGCGGCGTGCTGCTGCTCGCCCTGCTGCATTCGCCGTTGCGCTACCTGCCGCCCGCCGCCG CCCGGTTGCTGACCGCCATCAACCGCGACCTGCTCCGGCAGGATTTTGCCGGGTGGACGAAGGAGTCCGCCGAATCGGTG ATCCTGAATGCGGACGGACAGACCGCCAGCGCCATAGCCGATACCGGCGACACCCTGCTGGCCCGCTATGCCAAAAACAT GACCGACGATGCCCGGCAGGGGCGGCTTGATCCGGTGCTGTGCCGCGATAACGAAATTGACCTGATGATCGATATCCTCT GCCGCCGCCGTAAAAATAATCCGGTGGTGGTGGGCGAAGCGGGCGTGGGCAAAAGCGCGCTGATTGAAGGGCTGGCGCTG CGCATTATTGCCGGTCAGGTGCCGGACAAACTGCGCGATACCGATATTATGACGCTGGATCTCGGCGCATTACAGGCGGG CGCGTCGGTGAAAGGTGAATTTGAGAAGCGCTTTAAGGGGCTGATGGCGGAAGTCATTCAGTCGCCGAAACCCGTCATCC TGTTTATCGACGAAGCCCACACGCTGATTGGCGCGGGCAACCAGCAGGGCGGGCTGGATATCTCCAACCTGCTCAAACCG GCACTGGCGCGCGGCGAGCTGAAAACCATCGCCGCCACCACCTGGAGCGAATACAAAAAATACTTCGAGAAAGACTCCGC CCTGTCGCGCCGTTTCCAGTTAGTGAAAGTCAGCGAACCCAATGCTGCCGAAGCCACCATTATTCTGCGCGGCCTGTCGG CGGTGTATGAGCAGTCCCACGGCGTGCTGATTGACGATGAAGCCTTACAGGCCGCTGCGACGTTGAGCGAGCGCTACCTG TCAGGCCGCCAGTTGCCGGATAAGGCCATTGATGTGCTGGATACCGCCTGCGCCCGCGTGGCGATTAACCTCTCCTCGCC GCCGAGACAAATCTCGGCGCTGACCACCCTGCGCCAGCAGTGTGAAGCGGAAATCCGCCAGCTTGAGCGTGAGATCCGTA TTGGCCTGCGGTCGGACACCTCACGGCTAAACGAGGTTCTGGCGCAGTATGACGAAACGCTGAGCGAACTGGATGCGCTG GAGGCCGCGTGGCGCCAGCAGCAGACGCTGGTGCAGGAGATTATCGCGCTGCGTAAGGGGCTGCTGGACGAAACGGACGC TACCGGCAACGACGAAACCGCAACGCCTGAAACAGAGGCGGTGGGCAGTGACGATGAATCCGTCACAGCGCCGCCGGAAG CGGAACCGGAAATTTCGCCAGCCGCCCGCCTCGCGCAGCTCACCGCCGAACTGGACGCCCTGCACCACACGCAGCTGCTG GTCTCCCCACACGTCGATAAAAAACAGATAGCCAGCGTGATTACCGAATGGACCGGCGTGCCGCTTAACCGCCTGTCACA AAACGAAATGTCGGTCATCACCGACCTGCCGCAGTGGCTGGGCGACACCATTAAAGGCCAGGCGCTGGCGATTAAGCACC TGCACAAACACCTGCTGACCGCCCGCGCCGATCTGCGCCGTCCGGGACGCCCGCTCGGCGCGTTCCTGCTGGCCGGTCCC AGCGGTGTCGGCAAAACCGAAACCGTGCTGCAACTGGCCGAACTGCTCTACGGCGGTCGCCAGTACCTGACCACCATCAA TATGTCGGAGTTTCAGGAGAAACACACCGTTTCACGCCTGATTGGTTCGCCGCCGGGCTATGTCGGCTACGGCGAGGGCG GCGTGCTGACCGAAGCGATTCGTCAGAAACCGTACTCCGTGGTGCTGCTCGACGAGGTGGAGAAAGCCCACCCGGACGTG CTCAACCTGTTCTACCAGGCGTTCGACAAGGGCGAGATGGCCGATGGCGAAGGGCGTCTTATCGACTGTAAAAATGTGGT GTTCTTCCTCACCTCCAACCTCGGCTATCAGGTGATTGTCGAACATGCCGACAACCCGGAAGCCATGCAGGAAGCGCTGT ACCCGGTACTGGCGGACTTCTTTAAACCGGCGCTGCTGGCGCGTATGGAAGTGGTGCCGTACCTGCCGTTATCCAGAGAA ACGCTTGCCGTCATTATCGCCGGGAAGCTGGCGCGGCTGGACAACGTACTGCGCGCCCGCTTCGGCGCGGAGGTGGTGAT TGAGCCGGAGGTGACCGACGAAATCATGCAGCGCGTCACCCGCGCCGAAAACGGCGCGCGGATGCTGGAGTCGGTCATCG ACGGCGAGATGCTGCCGCCGCTCTCCCTGCTGCTGTTGCAGAAAATGGCGGCGAATATCGCCATTGCCCGTATCACGCTG GGCGTGGCAAACGGCGCGTTTACCGCGGATGTGGAGGATGTGCCGGATGAGGATACTCAGCCCGTAGCGGAAGCAGAGGA CGAAGCCGTTCTATGA Protein sequence : MIQIDLATLVKRLAPFAKQALEAAASECMSQQAAEITVAHVLLQMLATPRSDFRVIAERAEIGADDLRQALTVENYATAR SSDSYPSFSPMLVEWLKEAWLLASAEMQQTELRGGVLLLALLHSPLRYLPPAAARLLTAINRDLLRQDFAGWTKESAESV ILNADGQTASAIADTGDTLLARYAKNMTDDARQGRLDPVLCRDNEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLAL RIIAGQVPDKLRDTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVIQSPKPVILFIDEAHTLIGAGNQQGGLDISNLLKP ALARGELKTIAATTWSEYKKYFEKDSALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDEALQAAATLSERYL SGRQLPDKAIDVLDTACARVAINLSSPPRQISALTTLRQQCEAEIRQLEREIRIGLRSDTSRLNEVLAQYDETLSELDAL EAAWRQQQTLVQEIIALRKGLLDETDATGNDETATPETEAVGSDDESVTAPPEAEPEISPAARLAQLTAELDALHHTQLL VSPHVDKKQIASVITEWTGVPLNRLSQNEMSVITDLPQWLGDTIKGQALAIKHLHKHLLTARADLRRPGRPLGAFLLAGP SGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDV LNLFYQAFDKGEMADGEGRLIDCKNVVFFLTSNLGYQVIVEHADNPEAMQEALYPVLADFFKPALLARMEVVPYLPLSRE TLAVIIAGKLARLDNVLRARFGAEVVIEPEVTDEIMQRVTRAENGARMLESVIDGEMLPPLSLLLLQKMAANIAIARITL GVANGAFTADVEDVPDEDTQPVAEAEDEAVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 0.0 | 85 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 0.0 | 85 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-122 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002215073.1 | chaperone protein clpB | VFG2084 | Protein | 0.0 | 58 |
| clpB | YP_002215073.1 | chaperone protein clpB | VFG2076 | Protein | 3e-132 | 42 |
