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Name : SeD_A1218 (SeD_A1218) Accession : YP_002215070.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : S : Function unknown COG ID : COG3523 EC number : - Position : 1208040 - 1211501 bp Length : 3462 bp Strand : - Note : identified by match to protein family HMM PF06744; match to protein family HMM PF06761 DNA sequence : ATGCCCCGGTTTAAGGTTTCTGCCGCCTGGCTGCTGGCGCTGGCGTGGATTTTGCTGCTGGTATGGTTCTGGTGGAAAGG TCCGTCATGGACGCTCTACGAGCAGCGCTGGCTGGCCCCGCTGGCGAACCGCTGGCTGGCCACCGCCGCCTGGGGGTTGA TTGCGCTGACGTGGCTGACCGTCCGGGTCATGAAGCGCCTGCAACTGCTGGAAAAACAGCAGCGCCAGCAACGGGACGAG GCGCAGGATCCGCTCAGCGTGGAACTGAACACCCAGCAACGCTATCTCGATCACTGGTTACTGCGTCTGCAACGCCATCT CGACAGCCGCCGCTATCTGTGGCAGCTACCGTGGTATATGGTCACTGGCCCGGCGGGAAGCGGTAAAACCACGCTGCTGC GCGAAGGGTATCCGTCCGACATTATTTATGCCCCGGAGGCGCTGCGGGGCGTGGAGCAGCGCCGGTATGTTATCCCGCAT GTGGGAAAACAGGCGGTGATTTTTGACGCTGACGGCCTCCTCTTTGAGCAACAGGATGCGGATATACTGCATCGCCGCCT GTGGACCCATATGCTGGACTGGCTGGCGCAAAAACGCGCCCGGCAGCCGCTGAACGGCCTGATACTGACGCTGGATCTGC CCGATCTTCTGACCGCCGACAAGCCACGCCGTGAGCACCTGTTGCAGATCCTGCGCGGACGTTTGCAGGATATACGCCAG CATCTTCACTGCCAGCTCCCCGTCTATGTGGTGCTGACCCGGCTGGATCTACTGCACGGTTTCGCCGCCCTGTTTCAGTC ACTGGACCGCAACGATCGCGACGCCATTCTTGGCGTCACCTTTACCCGTCATGCCCATGAAAATGACGACTGGCGTACAG AACTGAATGCCTTCTGGCAGACATGGGGCGAACAGTTGAATAACGTCCTGCCGGAGCGGATGTTAGCCCCCGGCTCCCGC AGTTCCCTGTTCAGCTTTGTCCGCCAGATCCAGGGGGGCCGCGAGCCGCTGATCGCCCTGCTGAACGGGCTGCTGGACGG GGAAAATATGGATGTGATGCTGCGCGGCGTGTACCTCACCTCCTCCCTGCAACGCGGCCAGATAGACGATATTTTTATGC AGTCCGCCGCCCGTCAGTTCCGGCTGGGCAGCAGTCCGCTGACCGCCTGGCCGCTGGTGGACACGTTACCGTATTTCACC CGTAATCTGTTTCCGCAGACCTTACTGGCTGAGCCGAACCTCGCCAGTGAAAGCCGCGTCTGGCTGATGCAGTCCCGCCG CCGGTTGTCCGTGTTTTCCGCCACTGGCGGCATCGCCGCCCTGCTGCTGATTATCGGCTGGCATCACTATTACAATAACA ACTGGCGTTCCGGCATCACCGTACTGGAGCAGGCCAAAGCTTTTATGTCGGTTCCGCCACCGCAGGGTATGGACGATTAT GGCAACCTGCAACTACCGTTACTTAACCCGGTGCGTGACGCCACGCTGGCCTACGGCGACTGGGGCGATCGCAGTCGTCT GGCCGATATGGGATTATATCAGGGCAGGCGTGTCGGCCCATATGTGGAGCAGACCTACCTGCAACTGCTGGAGCAGCGTT ACCTGCCCGCCCTGTTTAACGGCCTGGTCAAAGAGATGAATGCCGCGCCTGCGGAGAGCGAGGAGAAGCTCGCGGTATTG CGCGTTATCAGAATGCTGGAAGATAAAAGCGGACGCAGCGACGAGGTGGTGAAGCAGTATATGGCGAAACGCTGGAGCGA TAAATTTCACGGCCAGCGCGATATTCAGGCACAGCTAATGTCTCATCTGGACTACGCGCTGAAACACACCGACTGGCACG CGGAGCGTCAGGCAGGCGACGGCGACGCCATCAGCCGCTGGACGCCGTATGACAATCCGGTCGTGGCGGCGCAGAAAGAG CTCAGCAAACTGCCCGTCTACCAGCGCGTTTACCAGAGTCTGAAAACGCGGGCGATGGGCGTGCTGCCCGCTGATCTGAA CCTGCGTGACCAGGTGGGCGCCACGTTTGATCAGGTCTTTACCTCCGGGGATGATAATAAGCTCATTGTTCCGCAGTTCC TCACCCGTTACGGTCTGCAAAGTTATTTTGTCAAACAGCGCGACGCGCTGATCGAACTGACGGCGATGGATTCCTGGGTG CTGAACCTGACCCGCAGCGTGAAATACAGCGACGCCGACCGGGCGGAAATCCAGCGCCAGCTCACTGAACAGTATCTCAG CGACTACACCGCCACCTGGCGCGCCGGAATGGACAACCTTAACGTGCGCAATTACGAATCCATTGCGCAACTGACCGGGG CGCTGGAGCAGATCATCAGCGGCGATCAGCCGCTCCAGCGGGCGCTGACGGCACTGCGCGACAACACGCAGCCTGCCGTT CTCTCTGAAAAACTGGATGACAAGGCGCTTCAGGAGGCGATGGCGGAGCCGGATTACCAGTTGCTGACCCGCCTGGGGCA TGAATTTGCCCCGGAAAACAGCACGCTGGCGGTACAGAAAGACAAAGAAAACACTCTCCAGGCGGTCTATCAGCAACTGA CGGAGCTGCACCGTTACCTGCTGGCTATTCAGAACGCGCCGGTGCCGGGAAAATCAGCGCTGAAAGCGGTGCAGCTACGG CTGGATCAGAACAGCAGCGATCCTATTTTCGCCACCCGCCAGATGGCGAAAACCCTGCCTGCCCCGCTCAACCGCTGGGT GGGCAAGCTGGCGGATCAGGCCTGGCATGTGGTGATGGTGGAGGCAGTTCACTATATGGAAGTGGACTGGCGCGACAACG TGGTCAAACCCTTTAATGAACAACTCGCCGACAATTATCCGTTTAACCCACGCTCACAGTCAGATGCGTCGCTGGATGCG TTTGAACGCTTCTTTAAACCGAATGGCGTACTGGATACCTTTTATCAGCAGAACCTGCGTCTGTTTATGGAAAACGATCT GAGTCTGGAGGACGGGGATAACAACGTGATTATTCGTGAGGATGTCCGGGAGCAACTGGATACCGCACAGGAAATCCGCG AGGCGTTTTTCAGCAGACAGAACGGCCTGGGCGCGCAGTTTGCCGTGGAAACTGTGTCGCTTTCCGGCAACAAACGGCGC AGCGTGCTGAATCTGGACGGGCAGTTAGTGGACTACAGCCAGGGCCGCAATTACACCGCCCATCTGGTCTGGCCGAACAA CATGCGTGAAGGCAATGAAAGTAAGCTGACGCTGATAGGCGTCAGTGGCGGCGCGCCGCGCAGCATCAGTTTCAGCGGGC CGTGGGCGCAGTTCAGGCTGTTCGGCGCCGGGCAACTTACCGGCGTTCAGGAGGGGACATTCAGCGTGCGCTTTAACGTG GACGGCGGAGCGATGGTGTACCGGGTACATACCGATACGGAAGATAACCCCTTCACCGGCGGGCTGTTCAGTCAGTTCCG GCTGCCGGATACCCTGTACTGA Protein sequence : MPRFKVSAAWLLALAWILLLVWFWWKGPSWTLYEQRWLAPLANRWLATAAWGLIALTWLTVRVMKRLQLLEKQQRQQRDE AQDPLSVELNTQQRYLDHWLLRLQRHLDSRRYLWQLPWYMVTGPAGSGKTTLLREGYPSDIIYAPEALRGVEQRRYVIPH VGKQAVIFDADGLLFEQQDADILHRRLWTHMLDWLAQKRARQPLNGLILTLDLPDLLTADKPRREHLLQILRGRLQDIRQ HLHCQLPVYVVLTRLDLLHGFAALFQSLDRNDRDAILGVTFTRHAHENDDWRTELNAFWQTWGEQLNNVLPERMLAPGSR SSLFSFVRQIQGGREPLIALLNGLLDGENMDVMLRGVYLTSSLQRGQIDDIFMQSAARQFRLGSSPLTAWPLVDTLPYFT RNLFPQTLLAEPNLASESRVWLMQSRRRLSVFSATGGIAALLLIIGWHHYYNNNWRSGITVLEQAKAFMSVPPPQGMDDY GNLQLPLLNPVRDATLAYGDWGDRSRLADMGLYQGRRVGPYVEQTYLQLLEQRYLPALFNGLVKEMNAAPAESEEKLAVL RVIRMLEDKSGRSDEVVKQYMAKRWSDKFHGQRDIQAQLMSHLDYALKHTDWHAERQAGDGDAISRWTPYDNPVVAAQKE LSKLPVYQRVYQSLKTRAMGVLPADLNLRDQVGATFDQVFTSGDDNKLIVPQFLTRYGLQSYFVKQRDALIELTAMDSWV LNLTRSVKYSDADRAEIQRQLTEQYLSDYTATWRAGMDNLNVRNYESIAQLTGALEQIISGDQPLQRALTALRDNTQPAV LSEKLDDKALQEAMAEPDYQLLTRLGHEFAPENSTLAVQKDKENTLQAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLR LDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVHYMEVDWRDNVVKPFNEQLADNYPFNPRSQSDASLDA FERFFKPNGVLDTFYQQNLRLFMENDLSLEDGDNNVIIREDVREQLDTAQEIREAFFSRQNGLGAQFAVETVSLSGNKRR SVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGVSGGAPRSISFSGPWAQFRLFGAGQLTGVQEGTFSVRFNV DGGAMVYRVHTDTEDNPFTGGLFSQFRLPDTLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 78 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 78 |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 57 |
