|
Name : hpcD (SeD_A1179) Accession : YP_002215035.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Unknown Product : 5-carboxymethyl-2-hydroxymuconate delta-isomerase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG3232 EC number : 5.3.3.10 Position : 1170334 - 1170714 bp Length : 381 bp Strand : + Note : identified by match to protein family HMM PF02962 DNA sequence : ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCCGGCCTGTTCAGCAAGGTAAACGA GGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTG ACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGAT TGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAG Protein sequence : MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEV GEMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hpaF | AAO17181.1 | HpaF | Not tested | tcd island | Protein | 2e-48 | 81 |
