Gene Information

Name : hpaR (SeD_A1175)
Accession : YP_002215031.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Resistance
Product : homoprotocatechuate degradation operon regulator, HpaR
Function : -
COG functional category : K : Transcription
COG ID : COG1846
EC number : -
Position : 1166003 - 1166443 bp
Length : 441 bp
Strand : -
Note : identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337

DNA sequence :
ATGCATGATTCATTAACCATCGCATTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCCATCGTTAAAAGCCA
CAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGATAGCCCCTCTATGGATTTTCACGAGCTGGCCTTTC
GTACCTGCATTTTGCGTCCAAGTCTGACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCG
GTTAACGATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCCCGGAGCCAGGTAGA
AGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACACAGCAATTGATGCTGCTGCTGGACGATCTTATTG
CTCTGGGACGCCAGCATCCTGATAGCGAAGCGGAAGCATAG

Protein sequence :
MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSPSMDFHELAFRTCILRPSLTGILTRMERDGLVLRLKP
VNDQRKLYVMLTEQGQTLYARARSQVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpcR AAO17176.1 HpcR Not tested tcd island Protein 3e-43 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpaR YP_002215031.1 homoprotocatechuate degradation operon regulator, HpaR BAC0505 Protein 4e-33 56