Gene Information

Name : SeD_A1166 (SeD_A1166)
Accession : YP_002215022.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chaperone protein SigE
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1156370 - 1156711 bp
Length : 342 bp
Strand : -
Note : identified by match to protein family HMM PF07824

DNA sequence : 
ATGGAAAGTCTATTAAATCGTTTATATGCCGCGTTAGGCCTGGATGCACCAGAAGATGAGCCACTTCTCATCATTGATGA
TGGGATACAGGTTTATTTTAATGAATCCGATCATACACTGGAAATGTGCTGTCCCTTTATGCCATTGCCTGACGACATCC
TGACTTTGCAGCATTTTTTACGTCTTAACTATGCCAGCGCCGTCACTATCGGCGCTGACGCAGACAATACTGCTTTAGTG
GCGCTTTATCGCTTGCCGCAAACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGAATTATTCATTTCAAACGTGAAGCA
ATTGAAAGAGCATTATGCATAA

Protein sequence : 
MESLLNRLYAALGLDAPEDEPLLIIDDGIQVYFNESDHTLEMCCPFMPLPDDILTLQHFLRLNYASAVTIGADADNTALV
ALYRLPQTSTEEEALTGFELFISNVKQLKEHYA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pipC AAC33724.1 PipC Virulence SPI-5 Protein 1e-47 100
pipC YP_216029.1 hypothetical protein Virulence SPI-5 Protein 5e-47 99
pipC NP_460063.1 pathogenicity island-encoded protein C Virulence SPI-5 Protein 5e-47 99
sigE NP_455587.1 cell invasion protein Virulence SPI-5 Protein 1e-46 99
sigE AAS66828.1 SigE Not tested SSR-1 Protein 3e-20 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1166 YP_002215022.1 chaperone protein SigE VFG0591 Protein 1e-47 99