Gene Information

Name : SeD_B0104 (SeD_B0104)
Accession : YP_002213934.1
Strain :
Genome accession: NC_011204
Putative virulence/resistance : Resistance
Product : pilx1 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 63388 - 64035 bp
Length : 648 bp
Strand : -
Note : identified by match to protein family HMM PF01464

DNA sequence :
ATGTTATCTACTTCTACTTTTCTTGCGCTTGCCATGCAATGCGCTGCCAGCGTTCATCCTGACACAACGCACGAAGTCGC
CAGGGTTGAATCAGGTTTTAACCCATATGCGATTGCGGAAATAATACCAAAGGTTAAACGCAAACCTGGTGATAAAGGCG
TAGTATCTTACTTTCCAGAATCAAAGGAGGCAGCACTTAAGATCGTTAAAAACATTGAATTACGGAATCATCGTTACTCT
GTAGGACTTATGCAAATAACAAGTACCAATTTTGCAAAGTTCGGCACAACAGCAGAGAAAATGTTTGATCCATGCGAAAA
TCTTAAGGTATCAGAAAAAATACTGGTTGACTGTTATAAACGAGGTGGCGACTTAGTGCGTGGTCTGAGTTGCTATTATT
CCGGCAATCCAGAAACAGGAGTAAAGCCAGAACCTGAATTTAATAATACAAGTTATGTACAACGTATAGGATTTAGCCCT
CCTGATAATAAAAAAATTTTTATTGTTCCCTCTGTAAAGGAAATGATTAAAAAGGAGAATAAGACGACTATCACACCTGA
AGAAATCATTATATATCCTCAATACGCCATGCGTGGCACTGTATCAAATGAAAAGGAAACAAAAGATGTTGAAATTAAAT
CTGAATAA

Protein sequence :
MLSTSTFLALAMQCAASVHPDTTHEVARVESGFNPYAIAEIIPKVKRKPGDKGVVSYFPESKEAALKIVKNIELRNHRYS
VGLMQITSTNFAKFGTTAEKMFDPCENLKVSEKILVDCYKRGGDLVRGLSCYYSGNPETGVKPEPEFNNTSYVQRIGFSP
PDNKKIFIVPSVKEMIKKENKTTITPEEIIIYPQYAMRGTVSNEKETKDVEIKSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP70283.1 Pilx1/VirB1-like protein Not tested HPI Protein 2e-47 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_B0104 YP_002213934.1 pilx1 protein BAC0396 Protein 1e-40 52