Gene Information

Name : VFMJ11_A0859 (VFMJ11_A0859)
Accession : YP_002158407.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.-
Position : 959933 - 960619 bp
Length : 687 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATGATCAGTTTTAAAGGAATAGAAAAAACCTATCAGCTCGGTTCACAGCGTGTGGAGGCTTTGAAACAAGTAGATGG
TTTTATCATAAAGGGCAGCATGGTGGCGTTATGTGGACCATCGGGATCAGGTAAAAGTACCTTATTAAATATCTTAGGTT
TACTTGATATGGATTATCAGGGCGAAATTAAAATGGATGGTGAGTTTTACCCTAAAGACCCTATTGAAGCCGCTAAGTTA
CGACGTCACCAACTGGGCTTTGTGTTTCAGCGTTTTAATTTAGTCCCCGTGATGACCGCATTAGAGAACGTAGCATACCC
ACTAGTGTTAAATGGATACAGCAGTAAAGAGCAAAGGAACTTAGCCACTGAAATGCTAGAAAAAGTGGGATTAGGCGATT
TTATTCACCACAGACCTGATAACCTTTCTGGTGGACAACAGCAACGTGTCGCCATTGCTCGTGCCTTAGTTCATAAACCA
AGTTTGGTTATTGCGGATGAGCCAACAGCCAGTCTAGATAGTCAAACTGCAGAGACCGTGATTGATATTATGAAAGCACT
CGGGAAGGAAATTGGCACCACCTTTATTGTTGCAACGCATGATTATCGAATGGCGCAACACTGTGATACTTGTATCAACT
TACTGGATGGAACCATCAGCAAGGAGGCCGTGTCATGGGCAAGTTAA

Protein sequence : 
MMISFKGIEKTYQLGSQRVEALKQVDGFIIKGSMVALCGPSGSGKSTLLNILGLLDMDYQGEIKMDGEFYPKDPIEAAKL
RRHQLGFVFQRFNLVPVMTALENVAYPLVLNGYSSKEQRNLATEMLEKVGLGDFIHHRPDNLSGGQQQRVAIARALVHKP
SLVIADEPTASLDSQTAETVIDIMKALGKEIGTTFIVATHDYRMAQHCDTCINLLDGTISKEAVSWAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0859 YP_002158407.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 9e-37 45
VFMJ11_A0859 YP_002158407.1 lipoprotein-releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 4e-33 45
VFMJ11_A0859 YP_002158407.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 2e-37 42