Gene Information

Name : VFMJ11_A0853 (VFMJ11_A0853)
Accession : YP_002158401.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Unknown
Product : oligo-1,6-glucosidase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0366
EC number : 3.2.1.10
Position : 953075 - 954706 bp
Length : 1632 bp
Strand : +
Note : identified by match to protein family HMM PF00128

DNA sequence :
ATGGAAAAGCGTTGGTGGCATAACAGTGTTGTATATCAAATTTACCCTCGTAGCTTCTGTGACTCAAATAATGATGGTAT
TGGTGATCTACAAGGTATTATTAGTAAACTGGATTACTTGCAAGGTCTTGGTATTGATGTAATTTGGCTTTCTCCTGTTT
ATCAATCTCCAATGGATGATAACGGTTACGATATCTCTGATTATCAAGCGATTGCGGCTGAATTTGGCACCATGGAAGAC
ATGAAGCGTTTAATGCAACAAGCAGAAGATCGCGGCATTAAAGTGGTAATGGATTTAGTGGTTAACCACACATCAGACGA
ACACGCTTGGTTTGTTGAAGCAAAAAGTGATAAAAATAGTCAATACCGTGATTTTTATATCTGGCGTGATGCAGGTGAAA
ACGGCGAAGCACCCAGTGACATAGGATCCATTTTTGGTGGTTCAGCATGGCAGTGGGATGAAGAGAATCAACAATACTAT
TTTCATTTATTCTCTAAACGCCAACCAGATTTAAACTGGGAGAACCCAGCTGTTCACCAAAAAGTCTTTGATATGATGAA
CTGGTGGATTGACCAAGGTATTGGTGGCTTCCGCCTAGATGTTATCGATTTAATCGGCAAAGAAGTCGACAAGAAAATCA
CAGGTGATGGTGAGCGTCTGCACCCGCTTCTTCAAAAAATGAATCAAGCGACATTCGGTGATAAAGACTTGCTTACAGTG
GGCGAAACATGGGGAGCAACACCTGAAAGTGCTCAACTTTATAGTGATCCAGCTCGTAATGAGCTATCAATGGTGTTCCA
GTTTGAGCACATTACCCTGCTTTGGGAAGATGGCGATAAATGGAAGCCTAAGCCGCTTGATCTCGCCTTATTTAAGCAAG
TGATGACCAAATGGCAAGTAGAGCTAAACAATAAGGGTTGGAACTCACTATTTTGGAATAACCACGATTTACCTCGAGTT
GTCTCTAAATACGGTTGTGATGGCCAATATCGTGTTGAGTCGGCAAAAATGCTGGCAACCACTCTGCATATGATGAAAGG
CACGCCTTATATTTTCCAAGGTGAAGAGATCGGCATGACGAACGTCGCATTCGATACGTTAGAAGAGTACAAAGACATTG
AAACATTGAACTTCTATCGAGTAAAAACCGAATCAGGCGTAAGTCATGAAAGTATGATGAAAGGGATCCATGCCAATAGC
CGTGATAATGCTCGTACACCAATGCACTGGGATAACTCTGATAATGCAGGATTTACTCAAGGTACACCTTGGATCAAACT
GAACCCGAATTACCCTGAGATCAACGTTGCCGCAGCGCTAGAAGATAAAAACTCGATTTTCTATCACTATCAAAAACTGA
TCGCTCTGAGAAAGCAGAACCCAGTGATTGTCTATGGTGATTTTATTCCTCTGTTTGAAACGCACTCTGCCGTGTTTGCT
TATGAGCGTAAAGATAATGAACAACACTTCATTGTATTAAACAACTTTAGTGCAGAGCCACAAACATTAGCATTGCCTGA
GCATATTGCTAACCGCTCTGTAGAGTGCTTGATCAGCAATCTTGAGCCAACAACACAATTAGGCTCTGAGTTGATACTAG
CACCTTATCAAAGCTTGGTTTTAGCGCTTTAA

Protein sequence :
MEKRWWHNSVVYQIYPRSFCDSNNDGIGDLQGIISKLDYLQGLGIDVIWLSPVYQSPMDDNGYDISDYQAIAAEFGTMED
MKRLMQQAEDRGIKVVMDLVVNHTSDEHAWFVEAKSDKNSQYRDFYIWRDAGENGEAPSDIGSIFGGSAWQWDEENQQYY
FHLFSKRQPDLNWENPAVHQKVFDMMNWWIDQGIGGFRLDVIDLIGKEVDKKITGDGERLHPLLQKMNQATFGDKDLLTV
GETWGATPESAQLYSDPARNELSMVFQFEHITLLWEDGDKWKPKPLDLALFKQVMTKWQVELNNKGWNSLFWNNHDLPRV
VSKYGCDGQYRVESAKMLATTLHMMKGTPYIFQGEEIGMTNVAFDTLEEYKDIETLNFYRVKTESGVSHESMMKGIHANS
RDNARTPMHWDNSDNAGFTQGTPWIKLNPNYPEINVAAALEDKNSIFYHYQKLIALRKQNPVIVYGDFIPLFETHSAVFA
YERKDNEQHFIVLNNFSAEPQTLALPEHIANRSVECLISNLEPTTQLGSELILAPYQSLVLAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
malL YP_251987.1 oligosaccharide alpha-1,6-glucosidase Not tested SCCmec Protein 7e-131 53