Gene Information

Name : VFMJ11_A0485 (VFMJ11_A0485)
Accession : YP_002158034.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Virulence
Product : probable transcriptional regulatory protein YedW
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 548627 - 549304 bp
Length : 678 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAAAATATTGGTTATTGAAGACGACCAAACAACCCGAGATTTTGTAACAAAAGCACTAGAGCAAGAAGGGTTTATTAC
TGATAGCACCGAAGATGGAAAAGAAGGCTTAATGATGGCGATAAGTTGTGATTATCAATTAATCATTCTTGACCGCATGC
TACCTAATCTTGATGGGTTAAAAATCCTATCAGCAATTCGTGCTACAGGAAATAATACCCCTGTACTTATTCTTAGTGCA
TTAGATAGCGTCGATCAAAGGGTTGAAGGACTTACTGCAGGTAGTGACGATTACCTAACCAAACCTTTTGCTTTAACTGA
GCTATTAGCTCGTATCAATATCATATTACGTCGAAATAGACCGATTGAAAGTGCTTCTAACGAACTGAAAATTAAGAATT
TAAACATCAATTTACGTTCGCAAAAAGTCACGATCAATGACAACATTGTTCCATTACAAAATAAAGAGTTTATTTTATTA
CGTTATCTTGCGGAAAATGCTGATGAAGTGGTTTCTCGAATGCGATTATTTGAAGCTGCATGGGATTATCACTTTGATCC
AAAAACCAATGTCATTGATGTTCATATTGCTAAGTTACGCAAAAAATTAGATAACTCTGGAGCAGTGGATCTCATCGAAA
CCGTACGTGGAGCTGGTTATGTTCTTAGAACAACGTGA

Protein sequence : 
MKILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRMLPNLDGLKILSAIRATGNNTPVLILSA
LDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNRPIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILL
RYLAENADEVVSRMRLFEAAWDYHFDPKTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGYVLRTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-35 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-34 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0125 Protein 8e-35 44
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0197 Protein 1e-33 44
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0308 Protein 3e-34 43
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0347 Protein 7e-35 42
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0111 Protein 7e-37 42
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_003923.1003417.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_013450.8614146.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_002951.3238224.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_007793.3914065.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_002758.1121390.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_010079.5776364.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_002952.2859858.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW NC_007622.3794948.p0 Protein 3e-27 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW AE015929.1.gene1106. Protein 6e-24 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0083 Protein 7e-31 41
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW BAC0638 Protein 4e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW VFG0596 Protein 6e-36 45
VFMJ11_A0485 YP_002158034.1 probable transcriptional regulatory protein YedW VFG1389 Protein 7e-31 43