|
Name : VFMJ11_A0394 (VFMJ11_A0394) Accession : YP_002157949.1 Strain : Genome accession: NC_011186 Putative virulence/resistance : Resistance Product : transporter, AcrB/D/F family Function : - COG functional category : V : Defense mechanisms COG ID : COG0841 EC number : - Position : 444595 - 447645 bp Length : 3051 bp Strand : - Note : identified by match to protein family HMM PF00873 DNA sequence : ATGGATATCGCACGTTACACTATTGCTAAGCGTACCTCCGTATGGGTGCTTATTGCATTAATTTTATTTGGTGGCTATTT AAGTTACTTAAAACTCGGACGATTTGAAGATCCTGAATTTGTTATTCGCCAAGCGGTGATTAATACTCCTTATTCAGGTG CAACAGCACAAGAAGTCTCAGATGAAGTCACTGATATCATTGAAGGTGCGGTTCAATCTCTTCAAGAAGTGAAAGAGATA AAATCTGTATCGAAACAAAGCATGTCTGAAGTAACAGTTGAGATCAAACTTGAATTTGCAGGCAGTCAAGCCGCACTGCA ACAAGTATGGGACAAGCTGCGCCGAAAAGTGGGTGATGCACAACGCATGTTACCTCCGGGAGCGGGCTCATCCATCGTTA ATGATGATTTCTCAGATGTTTATGCCCTATTCTTCGCCGTGACTGGTGATGGGTTTAGTGATAAACAGCTGCAAGATTAT GTTGATGATCTCCGACGAGAACTGGTATTGGTTCCCGGTGTAGCAAAAACAGCCACGTTAGGTGAACGCCAAGAGACCAT TTTTATTGAAATGTCTGGCGAGCGTATGGCTAAGTTTGGCGTGTCAGCAGAAAAAGTGTACCAAGTATTGCAAAAGCAGA ACATGGTAACGGTTGCAGGAAGTATTGAGACCGATTCAATGCGTATCCCTGTTATTCCAAGCTCAAATGTGAACTCGTTT AATGATCTCATTAATCTGCAAATCAATCTTGGAGATAACAATGCAGTACTTCGCTTAGGTGATATTGCAACGGTAACTCG TGGGTATCAAGAACCGCAAAGTATGATGGTTCGCTATAATGGTCAACGAGCGGTAGGATTTGGTATCTCAAATGTCGCAG GTGGCAACGTGGTTGATATGGGTGATGCCGTAAAAGCACGTATTGCTGAATTAGAAAACCAGCGTCCTTTAGGTATTGAG CTAAATGTTATTTCAATGCAATCAGATTCGGTTCGAGCTTCGGTTACTAACTTTATTGATAACTTGATTGCTGCGGTTGT GATCGTATTTATTGTTCTTCTTCTCTTTATGGGCGTTCGCTCAGGGATCATTATCGGCTTTGTATTGCTATTAACTGTTG CTGGTACGTTATGCATCATGCTAATTGAAGACATTGCGATGCAACGCATTTCATTAGGTGCCTTAATCATCGCATTAGGG ATGTTAGTGGATAACGCCATTGTAGTAACTGATGGTATTTTAGTTCGCTTACAAACAACGCCAAACGATAGTCGAGATGA AATCGTATCTGATGTGGTTAATGCGACAAAATGGCCTCTACTTGGCGGTACGGTTGTAGGTATCTGTGCATTCAGTGCAA TTGGTTTATCACCATCTGATATGGGTGAATATGCAGGTTCGCTATTTTGGGTAATTCTTTACTCTATGCTACTAAGCTGG GTATTTGCCGTTACCATTACGCCGATGCTGTGTTATGACTTTTTGAAAGTAAAACCGGTAGACACACAAGCCCCCGTTGG CCGTATAAGCCGTTGGTATCGTCAATTATTAACTTGGGTAATCAAACACCGGGTAATTAGCCTTAGCCTATTATTAATGG TCTTATTTACTTCTATTTATGGGGCAAAATACATTCCACCAGGTTTTATGCCTGAATCTCAACGCGCACAATTTGTGGTT GATGTGTATTTACCTCAAGGCTCAGACATAAAACGTACAGAGCAAACTATTGCCAGTATTGAGCACGACATAAAACAAAA AGCAGGCATTACTAACATCACCAGTTTTGTTGGTGGCGGTGGTCTACGCTTTATGCTGACTTATTCACCAGAGGCGCGTA ACCCAAGTTACGGTCAATTATTAATTGATATTGATGATTACCAAAACATTGCGCCATTATTGGGTGAATTACAAAGTGAG CTTGATGAAAAATACACAGATGCATCAATCAAAGTATGGAAGTTCATGCTGGGTCGTGGGGGCGGTAAAAAAATTGAAGC AGGATTTAAAGGTCCAGACAGTGCCGTACTTCGTCAATTAGCGGAACAAGCAAAAACCATCATGCTAAATGATCCACAAT TGATTGCGGTTCAAGATGATTGGCGTCAACAAGTACCCGTGCTACGTCCTCGTTATTCAGAAGAAAAAGCACAACAATTT GGTTTAACAACGCAAGAAATTAATCAGGCCATTGCACAAACCTTATCTGGACGTAATGTCGGTGTTTACCGTGAAGGTAA TGATCTTATCCCGATTGTGGCACGTTCACCAGAAACAGAACGAAGTCACCAACGTGCAATTGAAAACACAGAAGTATACA GCCATGCTGTTGGTGGTTTTATCTCTGTTAGCCAATTAGTTGAATCCACTGATGTGGTTTGGGAAGATGCGATTTTGCGT CGTATTGATAGAATGCCAACGATTCTGGTGCAAGCGGACCCCGCTCCAGGCGTATTAACCGCTGATGCATTTAATCAAGT TCGTCAAAAAATCGAAGCGATCGAGCTGCCATCAGGTTATGAGTTAATTTGGTATGGTGAATATAAAGCGTCTAAAGATG CGAATGAAGGATTAGTGATTTCAGCACCTTATGGTTTTGCTGCAATGATCTTATCGGTTATTTTCATGTTTAATGCGCTA CGTCAGCCATTAGTCATTTGGCTAACAGCACCACTTGCTATTATTGGAGTTACGGTTGGATTAATCATATTCCAAACCCC ATTTGAGTTTATGGCGATATTAGGTTTCTTAAGCTTAATTGGTATGATGGTGAAAAATGCCATTGTATTAGTAGACCAAG CCGATGCTGAAATTAGAGAAGGTAAGCTGCCATATAATGCCATTATCGACGCCTCTTTAAGTCGTGCTCGACCAGTATTA CTTGGCGCATTGACCACTATCTTAGGGGTTGCACCATTGCTGATTGACCCATTCTTCAAGAGTATGGCAGTAACCATTAT GTTTGGTTTGTTATTTGCAACAATCCTGACGTTAATCGTTATTCCATTGTTCTATGCAATGTTCTTCAGAATCAAAGCAA TTGATGCGTAA Protein sequence : MDIARYTIAKRTSVWVLIALILFGGYLSYLKLGRFEDPEFVIRQAVINTPYSGATAQEVSDEVTDIIEGAVQSLQEVKEI KSVSKQSMSEVTVEIKLEFAGSQAALQQVWDKLRRKVGDAQRMLPPGAGSSIVNDDFSDVYALFFAVTGDGFSDKQLQDY VDDLRRELVLVPGVAKTATLGERQETIFIEMSGERMAKFGVSAEKVYQVLQKQNMVTVAGSIETDSMRIPVIPSSNVNSF NDLINLQINLGDNNAVLRLGDIATVTRGYQEPQSMMVRYNGQRAVGFGISNVAGGNVVDMGDAVKARIAELENQRPLGIE LNVISMQSDSVRASVTNFIDNLIAAVVIVFIVLLLFMGVRSGIIIGFVLLLTVAGTLCIMLIEDIAMQRISLGALIIALG MLVDNAIVVTDGILVRLQTTPNDSRDEIVSDVVNATKWPLLGGTVVGICAFSAIGLSPSDMGEYAGSLFWVILYSMLLSW VFAVTITPMLCYDFLKVKPVDTQAPVGRISRWYRQLLTWVIKHRVISLSLLLMVLFTSIYGAKYIPPGFMPESQRAQFVV DVYLPQGSDIKRTEQTIASIEHDIKQKAGITNITSFVGGGGLRFMLTYSPEARNPSYGQLLIDIDDYQNIAPLLGELQSE LDEKYTDASIKVWKFMLGRGGGKKIEAGFKGPDSAVLRQLAEQAKTIMLNDPQLIAVQDDWRQQVPVLRPRYSEEKAQQF GLTTQEINQAIAQTLSGRNVGVYREGNDLIPIVARSPETERSHQRAIENTEVYSHAVGGFISVSQLVESTDVVWEDAILR RIDRMPTILVQADPAPGVLTADAFNQVRQKIEAIELPSGYELIWYGEYKASKDANEGLVISAPYGFAAMILSVIFMFNAL RQPLVIWLTAPLAIIGVTVGLIIFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIREGKLPYNAIIDASLSRARPVL LGALTTILGVAPLLIDPFFKSMAVTIMFGLLFATILTLIVIPLFYAMFFRIKAIDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1355 | YP_001217299.1 | AcrB/AcrD/AcrF family transporter | Not tested | VPI-2 | Protein | 0.0 | 81 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VFMJ11_A0394 | YP_002157949.1 | transporter, AcrB/D/F family | BAC0425 | Protein | 0.0 | 81 |
| VFMJ11_A0394 | YP_002157949.1 | transporter, AcrB/D/F family | BAC0519 | Protein | 0.0 | 44 |
| VFMJ11_A0394 | YP_002157949.1 | transporter, AcrB/D/F family | BAC0428 | Protein | 0.0 | 43 |
| VFMJ11_A0394 | YP_002157949.1 | transporter, AcrB/D/F family | BAC0526 | Protein | 0.0 | 41 |
