Gene Information

Name : VFMJ11_A0213 (VFMJ11_A0213)
Accession : YP_002157770.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Virulence
Product : transcriptional activator protein IrlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 245345 - 246025 bp
Length : 681 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGAAACTACTTATTATCGAAGATGAAACCAAAACAGGAGAGTACCTAAAAAAGGGATTAACAGAGTCAGGTTATACTGT
TGATCTATCACAAGATGGTGCTGACGGTTTATATAACGCAACCACCAATCAATACGACTTAATCATCTTAGATGTCATGT
TACCTAAGCTAAATGGTTGGCAAATTCTACAAACACTACGAAATTGTGAAAATGATACGCCAATCATTATGCTCACCGCC
AAAGATCAAATTGATGATAGAGTGAAAGGGTTTGAATTAGGAGCAAATGATTACCTAATTAAACCCTTTGCTTTTGCTGA
ACTAAAAGCTCGTGTTGAAAATGCCCTCAGAGCAAAATCAGTGATTTCGCAACCATCATCAAATGAGTTAGTTTTGCATG
ATTTAAAATTGGATCTGTTAAAACGAACCGCCACAAGAAACCAAGATAATATTACCCTTACTGCGAAAGAATTTTCATTA
CTTGAGTTATTTATGCGTAAACAAGGGGAAGTATTATCAAGAACAACAATCGCCTCCCTGATTTGGGACATGAATTTTGA
TAGTGATACCAATGTCATTGATGTCGCGGTAAAACGACTTCGTTCTAAAATAGATAAACCCTACGACACCCCACTAATTC
ATACTGTTCGCGGTATGGGTTATAAAATGGACGAGTGCTAG

Protein sequence : 
MKLLIIEDETKTGEYLKKGLTESGYTVDLSQDGADGLYNATTNQYDLIILDVMLPKLNGWQILQTLRNCENDTPIIMLTA
KDQIDDRVKGFELGANDYLIKPFAFAELKARVENALRAKSVISQPSSNELVLHDLKLDLLKRTATRNQDNITLTAKEFSL
LELFMRKQGEVLSRTTIASLIWDMNFDSDTNVIDVAVKRLRSKIDKPYDTPLIHTVRGMGYKMDEC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-52 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-51 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0111 Protein 3e-61 60
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0197 Protein 1e-58 58
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0125 Protein 2e-58 56
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0083 Protein 2e-56 56
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0308 Protein 2e-57 56
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0638 Protein 5e-51 56
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR BAC0347 Protein 2e-54 54
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_010079.5776364.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_002952.2859858.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_007622.3794948.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_003923.1003417.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_013450.8614146.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_002951.3238224.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_007793.3914065.p0 Protein 1e-30 41
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR NC_002758.1121390.p0 Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR VFG0596 Protein 3e-52 52
VFMJ11_A0213 YP_002157770.1 transcriptional activator protein IrlR VFG1389 Protein 6e-34 42