Gene Information

Name : VFMJ11_A1164 (VFMJ11_A1164)
Accession : YP_002158709.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : 3.6.3.-
Position : 1298808 - 1299485 bp
Length : 678 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGACGATTGCCATAAAAGTGAGTTCAGTTGGAAAGTCTGTGATTTCTAACGAGGCAGAATTAACCATTTTAAAAGACGT
TTCTTTTGAGGTGCAATCTGGTCAAAGTGTTGCGATTGTTGGCACGTCAGGTGCAGGTAAATCAACATTAATGACTTTGC
TTGCAGGGTTGGATACCCCCTCTACTGGTGATATTGAATTATTAGGGAAAAGCCTATCTCAAATGGATGATGAGGCCCGA
GCTCAGATCCGTAGTGAATCTATTGGTTTTGTATTTCAAAGTTTCTTACTTATCCCATCATTGACAGCGCTTGAGAATGT
CACTTTGCCGGCTATTTTACGTGGGGAAGGTGAAGACATTAAAAAAGCAAAACAGTTACTCGATTCTGTTGGACTTTCTG
GGCGAGAAACGCATCTGCCATCTCAACTTTCAGGTGGAGAGCAACAACGTGTGGCATTAGCTCGCGCCTTTATGACTCAA
CCCAAAATCCTGTTTGCTGATGAACCCACAGGAAATTTAGATCAACATACCGCTGAACACATTATTGAGCTTTTGTTTGA
AATGAACCAAAAACATGGGACAACCTTGGTTCTTATCACCCATGATCCTAAATTGGCTGAGCAATGTGGGCGTACACTGA
CGATAGATGCTGGGCAGATCCGCGAAGAGGTAAAGTAA

Protein sequence : 
MTIAIKVSSVGKSVISNEAELTILKDVSFEVQSGQSVAIVGTSGAGKSTLMTLLAGLDTPSTGDIELLGKSLSQMDDEAR
AQIRSESIGFVFQSFLLIPSLTALENVTLPAILRGEGEDIKKAKQLLDSVGLSGRETHLPSQLSGGEQQRVALARAFMTQ
PKILFADEPTGNLDQHTAEHIIELLFEMNQKHGTTLVLITHDPKLAEQCGRTLTIDAGQIREEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 47
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-36 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A1164 YP_002158709.1 lipoprotein-releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 1e-39 45
VFMJ11_A1164 YP_002158709.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 1e-41 45
VFMJ11_A1164 YP_002158709.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 1e-37 45
VFMJ11_A1164 YP_002158709.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene598.p Protein 3e-35 41