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Name : VFMJ11_B0055 (VFMJ11_B0055) Accession : YP_002157417.1 Strain : Genome accession: NC_011185 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 47899 - 50985 bp Length : 3087 bp Strand : + Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGAAAATAACAGAAGAAATGCTAGAAGACCATTGTATGGTCTGGTTTAGTAACCTTGGCTACCAAACTCTTCATGGCGG AGACTTAGAACCCACGGGTAAAGCGCCAGAACGCCAATCGCTTTCTGATGTGGTTTTAAAACCACGTCTCAAAAAGTCTT TAATGAAAATCAACCCTCACCTACCTGAAGACTGCATCGATACCGCTATCGATACACTTCTTACTACTGTACCGTCAGTA GCTCATGCAAACCATACGTTTCATCGTCAACTGATTGATGGCATTCAAGTAGAGTACGAAGACAGCGAAGGACGTCCTAA AGGCGATAAAGTCTACTTAGTCGATTTTACGAACCAGAATAACGATTGGTTAGCATTGCGCCAGTTCTCCGTTGATGGTG TCACAAATGGTGAAAAAGATAATCGCCGTCCAGATATCGTTGTATTCCTGAATGGTCTTCCAATATCTGTTCTTGAGCTT AAAAGCCCAGCAGATGAAAAAGCCGATGTATGGAAAGCGTACAATCAAATTCAAACGTACAAGAACGTCCTAAGAGATCT GTTTGTATTTAATGAGTCAGTCATCATATCTGATGGCACTGAGGCTTACATTGGCTCTCTGACCGCAGATAGAGACCGTT TCACACCTTGGCGTACCATTGATGGCTCTCGTGATGACTCTGAAGATACGCTTGCGCTTGAAGTGATGGTACGAGGCTTC TTTAATCAAGAATTGCTCTTAGATTACTTGCAATACTTTATCTCGTTTGAATGTGATAACGAAAAAGTAATTAAAAAGAT TGCAGGCTATCACCAGTTCCACGGTGTTCGCGCTGCGATTGAAAGCACGATCCGAGCAACGAGACACGATGGTGATCAGC GTTGCGGTGTGTTCTGGCATACCCAAGGTTCAGGTAAATCCTTATCAATGGGCTTCTACAGTGCGAAGCTAATGGCTGCG CCAGAAATGCGCAACCCAACGATTGTGGTCGTAACAGACCGTAATGACCTTGATGAGCAGTTGTTTGAAACATTCAGCAT CAATGCTGAGTTACTACGTGAAACACCAATTCAAGCAAAAGATCGTCACCACCTAAAAGAGCTGCTAGATAACAGACAAT CAGGTGGTATCTTTTTTACTACAATGCAAAAGTTCTCTCCTGATGAGGGTGAAAGTCGCTACCCTGCGCTTACAGAACGA AATAACATTGTGGTAATGGCTGATGAAGCTCACCGTTCACAATACGGCTTAAAAGCGCGTGTAGACAGTAAAACAGGTGA GATGAAGTATGGTTATGCTCAGCATTTAAGAGATGCACTTCCAAACGCTGGTTTTATCGGATTTACAGGGACTCCAGTTG AAATGGAAGACCGTGATACCCGTGTTGTTTTTGGTCAAGATGTATCGGTTTACGATATTGAACAAGCGCAACGTGACGGT GCTACGAAGAAGCTGTATTACGAAAGCCGCTTAATCAAATTAGATATGGATAAAAGCATTAAAGAAGAAGACTTAGATCA AGCGGTAGATGATCTCGTCGCTGAATATGATGAAGATGACCAATCTAGAACCAAAGCTAAAAATGCAGCTCTTGAAGCGT TAGTTTGCGCCGAAGACCGTATTGACCGTTTAGCACGAGACTTACTGACTCACTTTGGAAAGCGTGAAGAAGTAACGCTA ACAAAGGCGATGGCGGTGTGTATTAGCCGTGAAGCCTGTGTTCAGTTATACGATAAACTGCGCGAATTAAAACCTGAATG GCATGATGAGGATCCAGAGAAGGGATGCATGAAGGTCATTATGACTGGTACATCATCCGATCCTGAAAAGTATCAAAAAC ACATCCACAAAAAGCCTATTCAGAAGAAAATAGCTAAGCGTATTAAGGATCCAGATAGCGAGCTTAAGTTAGTTATCGTG TGTGACATGTGGCTAACAGGTTTTGATGCACCTTGCTTAAATACAATGTATATCGACAAACCGCTGAAAGGTCATAACTT GATGCAGGCGATTGCTCGTGTAAATCGTGTATTCCGCGACAAAGAAGGTGGTTTGATTGTGGACTATCTTGGTATCGCTC CTGAGCTAAGAAGCGCAGTTCGTAATTATACAGCAAGTGGTCAAGGTGAGCCTACAATTGATTTAGCACAAGCTCTTGAA GTGACGATGACTAAGTTAGATGTATGCCGTGGGATCATGCACGGCTTTGATTACAGCGATTACAAGACCAATACGTTAGG CTTGCTGGCTAAAGCAATGAACCATATTCTGAGCCTAGAAGATGGAAAAAAACGCTTTGATAAAGCAGCTCTATCGTTGT CTAAAGCATTCAGTTTATGTAGTTGCATGGATGAAGCGAAAGACATCAAAGAAGAAATCGCATTCTTTGAAACATTAAGA GCAGCTATCAAGAAGACAACGACATCAAAGCAACGTATGTCTGATGAAAATGTGCAGACAGCACTTCGCCAAGTAGTTTC TGAGTCTATTGTGTCTGGTGATATTGTTGATGTATTTGAATCGGCAGGATTGAATAAGCCAAATATCAGTATCCTTGATG ATGATTTCCTTGCTGAAGTTGAAAAAATTGAGCACAAAAATCTTGCCGTAGAGATGCTTAAAAAGCTAATCCAAGATGAA ATAAAAACTCGTACCGTGAAGAATGCTGTAGCATACAAAACATTCTCTGAGATGCTTAGAAATTCTTTAGACAAGTATCG CAACCGCTCAGTTGAAACGAGTGTTGTAATTGAAGAATTAATTAAACTGGCTAAAGAACTTCGAGATTCGGCTGATCGTG GTGATGATCTTGATTTAACGAAAGAGGAGCTTGCTTTCTTTGATGCCCTACTTGCAAATGAATCCGCTAAAGAGGCGATG AAGCAAGAAGATATCTTATTCATTGCACGAGAGTTAGCAGCAGAGATTCGTAAAAGTGCTCAACCTGATTGGACTAAGCG CAAGAACCTACGGTCCCGTATGAGAATTAAGATCAAGCAAATTCTAAAGAGAACCGGCTACCCACCTGACTGCCAAGAAG ATGCTGTTGAACTTGTTCTACAGCAAGCGGAACTGGTTAATCCTTAA Protein sequence : MKITEEMLEDHCMVWFSNLGYQTLHGGDLEPTGKAPERQSLSDVVLKPRLKKSLMKINPHLPEDCIDTAIDTLLTTVPSV AHANHTFHRQLIDGIQVEYEDSEGRPKGDKVYLVDFTNQNNDWLALRQFSVDGVTNGEKDNRRPDIVVFLNGLPISVLEL KSPADEKADVWKAYNQIQTYKNVLRDLFVFNESVIISDGTEAYIGSLTADRDRFTPWRTIDGSRDDSEDTLALEVMVRGF FNQELLLDYLQYFISFECDNEKVIKKIAGYHQFHGVRAAIESTIRATRHDGDQRCGVFWHTQGSGKSLSMGFYSAKLMAA PEMRNPTIVVVTDRNDLDEQLFETFSINAELLRETPIQAKDRHHLKELLDNRQSGGIFFTTMQKFSPDEGESRYPALTER NNIVVMADEAHRSQYGLKARVDSKTGEMKYGYAQHLRDALPNAGFIGFTGTPVEMEDRDTRVVFGQDVSVYDIEQAQRDG ATKKLYYESRLIKLDMDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAKNAALEALVCAEDRIDRLARDLLTHFGKREEVTL TKAMAVCISREACVQLYDKLRELKPEWHDEDPEKGCMKVIMTGTSSDPEKYQKHIHKKPIQKKIAKRIKDPDSELKLVIV CDMWLTGFDAPCLNTMYIDKPLKGHNLMQAIARVNRVFRDKEGGLIVDYLGIAPELRSAVRNYTASGQGEPTIDLAQALE VTMTKLDVCRGIMHGFDYSDYKTNTLGLLAKAMNHILSLEDGKKRFDKAALSLSKAFSLCSCMDEAKDIKEEIAFFETLR AAIKKTTTSKQRMSDENVQTALRQVVSESIVSGDIVDVFESAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDE IKTRTVKNAVAYKTFSEMLRNSLDKYRNRSVETSVVIEELIKLAKELRDSADRGDDLDLTKEELAFFDALLANESAKEAM KQEDILFIARELAAEIRKSAQPDWTKRKNLRSRMRIKIKQILKRTGYPPDCQEDAVELVLQQAELVNP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 51 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
