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Name : VFMJ11_B0053 (VFMJ11_B0053) Accession : YP_002157415.1 Strain : Genome accession: NC_011185 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 45003 - 46550 bp Length : 1548 bp Strand : + Note : identified by match to protein family HMM PF02384 DNA sequence : ATGGTTAAAAATGTTGGCGATAAAGCGTTTTTCGATACACTTTGGGATTCAGCGGTAGCACTACGTGGTGCTCTGCAACC ATCAGAATACAAGCACCCAGTGCTAGGCTTACTGTTTATTAAATACGTAAGTGACTCATTCACTGAACTTCAAGTGAACC TAAAAGAATGGGTTGCAGACGCAAACCATGATTACTACGGAATGGACATCAACGATCCAGACCTATACGAAGCTGAAAAC GTATTCTGGGTTCCAGAAGAAGCTCGTTGGGATTTCCTTGTAGGATCTGCAAAACAAACCAACATTGCGAAACTGCTAGA TGAAGCAGTTAAAGCCATTGAAGACAACAACTCTCAATTGAAAGGCATGTTGTATCGCGGCTTTGGTTTGCTGAAAATTC CATCATCTAAGCTGGGTGAGTTAATTGACTTGCTAGGTAAGTTGACCTTTAACTCGAAAGAACATCGCTCTGCTGACGTA CTAGGTCAGGCGTATGAATTCTTCCTTGGTAAGTTCGCTTTGGCGGAGGGAGCCTCGGCTGGCGCTTTCTACACTCCAGA AAGTATTGTCTCGACTATCGTTGAAGTGATTGCACCAACTAAAGGGCAATTGTATGAGCCAGCAATTGGTTCTGGCGGTA TGGTTGTGTGTTCTGAAAAGTTCATGGAACGGAACGGTGGTGAACGCGGTGATATTAGTGTGTACGGTCAAGAATATACC CATACCACTTGGAAGATGGCTGCGATGAACTTGACCATTCGTGGTCTAGATTTTGATTTGGGTAAAGAGAATGCCGATAC GCTATTAAATGATCTGCACAAAGACCTACGTGCTGATTACATTATGGCTAACCCTCCATTCAACCAAGAGAAATGGGGTG CAGCAAAAGTAGCAGGTGATGTTCGTTGGAAATGGGGACAACCATCAGATAGCAATGCCAACTACGCTTGGATCCAGCAC ATGCTTTACCACCTAAACGAAACAGGTCGTGCAGGTGTGGTAATGGCAAATGGTGCAATGACATCAACTGCCAACAACGA AGATGCTATTCGTAAAGCAATCATTGAAGATGACCTAGTTGAGTGTATGGTTGCTCTGCCACCTAAGTTGTTCATCAATA CTCAAATTCCATCTTGTATCTTCTTCTTCAACAAGAACAAGAAGCGCAAAGGTGAAACTCTGTTCATCGATGCTCGTCAC CTTGGTCGCCTAGAAAGCCGTGCTCAGCTTGTTTTTGATGAAGAGCACATCATGGAAATCGCTAACACCTACCATGCATG GGCTAAGACTGATTTTGCTGAGAAAGATAGCAAATATGTTGATATCGCAGGTTTCTGTAAGTCAGGCAAACTAGAAGATA TTGAGAAAGCTGGATTTGTGCTATCTCCAGGTCGTTACGTGGGTGCGGCGGAAGTTGAAGAAGATGAAGCTTCATACCAA GAAGATATGGCTACTTTAACAGGTCAACTATCTGAGCAGATTAAAAAATCAGTTTCACTTGATGAGCAAATTAAAGCTTC GCTTGCGGAGGTTGGTTATGATATTTGA Protein sequence : MVKNVGDKAFFDTLWDSAVALRGALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANHDYYGMDINDPDLYEAEN VFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLYRGFGLLKIPSSKLGELIDLLGKLTFNSKEHRSADV LGQAYEFFLGKFALAEGASAGAFYTPESIVSTIVEVIAPTKGQLYEPAIGSGGMVVCSEKFMERNGGERGDISVYGQEYT HTTWKMAAMNLTIRGLDFDLGKENADTLLNDLHKDLRADYIMANPPFNQEKWGAAKVAGDVRWKWGQPSDSNANYAWIQH MLYHLNETGRAGVVMANGAMTSTANNEDAIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFNKNKKRKGETLFIDARH LGRLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKYVDIAGFCKSGKLEDIEKAGFVLSPGRYVGAAEVEEDEASYQ EDMATLTGQLSEQIKKSVSLDEQIKASLAEVGYDI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 1e-121 | 50 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 3e-121 | 50 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 6e-122 | 50 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 2e-112 | 46 |
