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Name : gspD (VFMJ11_2597) Accession : YP_002157259.1 Strain : Genome accession: NC_011184 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2777896 - 2779932 bp Length : 2037 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 DNA sequence : GTGAAAAAGTGGATGGGCAAGGGAGCCTTATTACTTGCAAGTAGCATGATGTGGACATCAGCAATTGCAAATGACTTTAG TGCCAGTTTTAAAGGGACAGACATTCAAGAATTTATCAATATTGTTGGTCGTAATTTAGAAAAGACCATCATTGTTGATC CATCTGTTCGTGGAAAAGTTGATGTTCGTAGCTACGATTTATTAAATGAAGAACAATACTACCAATTCTTCCTTAGCGTA CTTGAAGTATATGGATACGCTGTGGTTGAAATGGATTCAGGTATTTTAAAGGTCATTAAAGATAAAGATGCAAAAACATC GGCAGTTCCTGTTCTTGGTGCAAAAGATCAAGTGAAAGGCGATGCGGTGATTACGCGAGTTATCGCTGTACGCAATGTGT CTGTTCGTGAGCTTTCTCCTTTGCTTCGTCAACTTAATGATAATGCGGGTGCAGGTAACGTGGTTCACTACGACCCAGCC AATATTATTATGATCACAGGTCGTGCAGCGGTGGTTAACCGTTTAGCTGAGATTATCGAACGTGTTGACCGCGCTGGTGA TAAAGAAGTCGAAGTGGTGGAGTTAGATAACGCATCAGCAGCAGAAATGGTGCGTATTGTTGATGCCCTAAATAAAACCA CAGATGCAAAAAATACCCCTGCATTCTTACAACCTAAATTGGTTGCGGATGAGCGTACTAACTCGATTTTAATTTCGGGT GATCCAAAAGTGCGTAATCGTCTGAAGAAACTAATCAAGCAGCTTGATGTTGAGATGGCGACCAAAGGGAATAATCAGGT CATCTATTTACGTTACGCTAAAGCCGAGGATTTGGTTGATGTACTAAAAGGTGTGTCAGATAACTTATCGGCAAGTAAGG GCTCTAAGCAAAAAAGCAGCTCACAAAACCGCAATGATGTGATGATTTCTGCACACGTTGATACGAACTCATTAGTGATC ACTGCGCCGCCCGATGTAATGCGTGCAATGAAAGATGTGATTGCTCAGTTGGATATTCGTCGTGCTCAAGTATTGATTGA GGCTTTAATCGTTGAATTAGCCGAAGGTGATGGCGTTAATTTAGGCGTTCAATGGGGTAATTTAGAAACTGGCGCGATGA TCCAATACAGCAACACAGGGGCGTCAATTGGTGCCACAATGGTTGGTTTGGAAGAAGCGAAAGATACAACAACTACGACT GCGGTTTACGATGAAAATGGTAAATTTGTTCGAAATGAAACCACAACCGAAGAGGGTAGCTATGATGCACTAGCAGGTGC TCTTGGTGGCGTTCAAGGTGCGGCAGTAAGCATTATGATGGGGGATTGGGCTGCATTAGTTACTGCGGTATCTACCGATT CCAATTCAAACATTCTTTCATCTCCAAGCATTACGGTGATGGATAATGGCGAAGCGTCATTCATTGTAGGTGAAGAAGTA CCGGTATTAACAGGGTCAACCGCAGGCTCAAGTAATGACAACCCATTCCAAACCGTTGATCGTAAAGAAGTGGGTATTAA GCTTAAAGTGGTACCACAAATTAACGAAGGTGACTCTGTTCGTCTAGATATCGAACAAGAAGTATCTAACGTATTAGGTG CTAACGGTGCAGTGGATGTGCGTTTTGCAAAACGTCAACTTAATACCTCGGTAATGGTGCAAGATGGTCAAATGCTAGTA CTCGGTGGTTTGATTGATGAACGTGCGCTTGAGAGCGAATCAAAAGTTCCGTTCTTAGGTGATATTCCTGTATTAGGTTA CCTGTTCAAATCAACCAGTACTCAGGTTGAGAAGAAAAACCTAATGGTATTCATTAAGCCAACCATTATTCGTAATGGAA TGACAGCGGATGGTATCACTCAGCGTAAATATAACTACATTCGAGCAGAGCAGTTATATAACGCAGAAAAAGGCCTAAAA CTGATGGATGATGCGAATATTCCAGTACTACCTACCTATGGTAAGGAACTGAATCACCCAGCTGAAATTCAAGCGTTTTC TGAGCAATTTGATGATAACGAGAAAAAGGAAAAATAA Protein sequence : MKKWMGKGALLLASSMMWTSAIANDFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSYDLLNEEQYYQFFLSV LEVYGYAVVEMDSGILKVIKDKDAKTSAVPVLGAKDQVKGDAVITRVIAVRNVSVRELSPLLRQLNDNAGAGNVVHYDPA NIIMITGRAAVVNRLAEIIERVDRAGDKEVEVVELDNASAAEMVRIVDALNKTTDAKNTPAFLQPKLVADERTNSILISG DPKVRNRLKKLIKQLDVEMATKGNNQVIYLRYAKAEDLVDVLKGVSDNLSASKGSKQKSSSQNRNDVMISAHVDTNSLVI TAPPDVMRAMKDVIAQLDIRRAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNTGASIGATMVGLEEAKDTTTTT AVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIMMGDWAALVTAVSTDSNSNILSSPSITVMDNGEASFIVGEEV PVLTGSTAGSSNDNPFQTVDRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLV LGGLIDERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIRNGMTADGITQRKYNYIRAEQLYNAEKGLK LMDDANIPVLPTYGKELNHPAEIQAFSEQFDDNEKKEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-159 | 53 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-167 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_002157259.1 | general secretion pathway protein D | VFG2047 | Protein | 4e-155 | 53 |
