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Name : gspF (VFMJ11_2595) Accession : YP_002157257.1 Strain : Genome accession: NC_011184 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 2775182 - 2776396 bp Length : 1215 bp Strand : - Note : identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCGGCGTTTGAATATAAAGCGTTAGAAAAAGGGAAACAGAAAAAAGGCGTCATGGAGGGAGATAACGCCCGCCAAGT TCGCCAGCGATTAAAAGAACAAGGTTTGATCCCTGTCGAAGTCATTGAAACCAAATCTAAGCAGCAAAAAAGTGCATCGC AAGGATTGAGTTTTAAACGTGGTATCAGTGTTAACGATTTATCATTGATCACTCGTCAATTGGCCACCTTAGTTCAAGCA GGGATGCCACTTGAAGAGAGTTTAAAAGCGGTAGCAGAGCAGGGTGAAAAAGCGCATATCCGTAGCATGATGATGGGGGT GCGTTCGCGGGTTATTGAAGGTTATCCTCTTGCTGAGAGTTTTGCGGATTATCCTCATGTATTTGATGATCTGTTTTGCT CAATGGTGGCAGCAGGTGAAAAATCAGGCCATTTGGATACGGTATTAAATCGTTTAGCGGATTACGCTGAAAATCGCCAG AAGATGCGCAGTAAATTACAGCAAGCGATGATTTATCCTATCATGCTCACTCTGATTGCTATTGCTGTAATTTCATTCTT GTTAGCAACGGTAGTTCCCAAAATTGTTGATCAATTTGTGCAAATGGGACAAGGACTTCCAACGGTTACTGAAGTTTTAT TGGCAGCCAGTAACTTTGTTGTTCATTGGGGATTATTGGTTGTTGTGGTTGTAATTGTTTTTATTGCTGGTGTGAAGTGG TTACTTACAAAACCGCATTTACGCTTAGCATGGGATAAAAAAATCTTACAGCTCCCTGTTATTGGTAAGGTAGTTCGAGG GTTAAATACCTCTCGTTTTGCTCGCACATTATCCATTTGTACATCAAGTGCAATTCCTTTGCTTGATGGTATGAAAGTCG CTGCTGATGTCATGAGTAATACCTACTTTAAGCAACAAGTATTAGAAGCGGCAGATAATGTTCGAGAGGGTGCAAGTTTA CGAGTCTCTCTTGAACAAACAAAACTGTTTCCCCCAATGATGTTACACATGATTGCCAGTGGTGAACAAAGTGGCGAGTT AGAGCAAATGCTAACGCGTTCTGCGGATAATCAAGACCGAGATTTTGAATCTTTAGTTAATATGGCTCTAGGGATTTTTG AACCGTTATTGATTGTCTTTATGGCAGGTATTGTTCTCTTCATTGTTGTTGCGACATTGATGCCAATAATCGAATTAAAC AATTTGGTTGGGTAG Protein sequence : MAAFEYKALEKGKQKKGVMEGDNARQVRQRLKEQGLIPVEVIETKSKQQKSASQGLSFKRGISVNDLSLITRQLATLVQA GMPLEESLKAVAEQGEKAHIRSMMMGVRSRVIEGYPLAESFADYPHVFDDLFCSMVAAGEKSGHLDTVLNRLADYAENRQ KMRSKLQQAMIYPIMLTLIAIAVISFLLATVVPKIVDQFVQMGQGLPTVTEVLLAASNFVVHWGLLVVVVVIVFIAGVKW LLTKPHLRLAWDKKILQLPVIGKVVRGLNTSRFARTLSICTSSAIPLLDGMKVAADVMSNTYFKQQVLEAADNVREGASL RVSLEQTKLFPPMMLHMIASGEQSGELEQMLTRSADNQDRDFESLVNMALGIFEPLLIVFMAGIVLFIVVATLMPIIELN NLVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-103 | 54 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-102 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_002157257.1 | general secretion pathway protein F | VFG2049 | Protein | 4e-100 | 53 |
| gspF | YP_002157257.1 | general secretion pathway protein F | VFG0181 | Protein | 6e-95 | 49 |
| gspF | YP_002157257.1 | general secretion pathway protein F | VFG1870 | Protein | 5e-79 | 43 |
