|
Name : SeAg_B4773 (SeAg_B4773) Accession : YP_002149406.2 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : - COG ID : - EC number : - Position : 4663976 - 4665238 bp Length : 1263 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGAAACTCAACGCTCGCCAGATAGAGACAGCAAAGCCGAAAGAGAAAGCCTATAAAATGGCTGATGGAGGCGGCTTGTA TCTTGAGGTCTCCCCTAAAGGTTCCAAATACTGGCGCATGAAGTATCGCCGCCCGTCTGACAAAAAGGAAGATCGGCTCG CTTTTGGTGTATACCCGACGATCACTTTGGCTGAGGCTCGGGCTAAGCGCGATGCAGCAAAGAAATTGTTGTCTCAGGGC ATTGACCCCAAAGTGGAGCAAAAGGGGGCACAAGCTGAAATTGAGGGGGCATATTTATTTGAAACTATCGCAAGGCAATG GCACGCAAGTAATCTAACTTGGAGCGAAGATCATAGCCATCGCGTTCTGCTGACCCTTGAGCAGTATATTTTCCCCTCGA TAGGTCAAATTGACGCTAGGACGTTGAGAACCAGCCAGCTTCTCAATCCGATCAAAGCTGTCGATACGGCAGGTAAACAT GATGTTGCGCAGCGACTGATGCAGCGCGTAAACGCAATTATGCGTTTCGGTGTGCAGAATGACCTTCTTGAGTCAAATCC TGCCAGTGATATGGCTGGAGCGCTTTTAAGCGTTAAGGCGACCCATCACCCAGCGCTACCCCCAAAAAGAATCCCTGAGT TCCTTGAAAGATTATCACGCTATAAAGGGCGACTAATGACACGGCTTGCCGTTGAATTAACGCTACTTACATTTATTCGT TCAAGTGAGATGCGTTTTGCTCGCTGGAGTGAAGTTAACTTTGAACGAAGCGAGTGGACGATACCCGGAATTCGTAAGCC TATTCCCGGCGTAAAACACTCTGAGCGTGGGATGAAGATGAAAACTGAACATATTGTTCCGCTGAGCAAACAGGCATTTG ATATTTTTAAACGTTTACATGCCTTGAGCGGTAAAGGTGAGGTGATATTTCCCAGCGATCATGACCCTAAAAAAGTAATG AGTGAAAATACAGTAAATAGCGCCTTACGTGTAATGGGATATGATACGAAAACGGAAGTATGTGGTCATGGATTTAGAAC TATGGCGCGTGGTGCGCTAAGTGAGTCGAAACTATGGAATGATGACGCTATTGAAAGACAGTTAAGCCACGTTGAACGAA AAAACGTGAAAGGTTCATATATGCACACTTCTGAATATCTTGAAGAAAGAAGATTAATGCTGCAATGGTGGGCTGATTAC ATTGATGCTAACAAGAATGGATCTATCACACCATATGATTTTGCGCGTGTGCATGGAAAATAA Protein sequence : MKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTITLAEARAKRDAAKKLLSQG IDPKVEQKGAQAEIEGAYLFETIARQWHASNLTWSEDHSHRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKH DVAQRLMQRVNAIMRFGVQNDLLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIR SSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHALSGKGEVIFPSDHDPKKVM SENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADY IDANKNGSITPYDFARVHGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 3e-142 | 73 |
| intB | CAD42017.1 | bacteriophage P4 integrase | Not tested | PAI II 536 | Protein | 9e-107 | 56 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 1e-109 | 54 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 6e-110 | 54 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 8e-110 | 54 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-109 | 54 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-109 | 54 |
| int | AAK00456.1 | Int | Not tested | SHI-1 | Protein | 6e-102 | 54 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 9e-109 | 54 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 7e-109 | 54 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 1e-110 | 54 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 7e-109 | 54 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 2e-109 | 54 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-109 | 54 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 4e-108 | 53 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 1e-108 | 53 |
| int | CAC81896.1 | integrase | Not tested | LEE II | Protein | 3e-101 | 53 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 7e-108 | 53 |
| Z4313 | NP_289539.1 | pathogenicity island integrase | Not tested | OI-122 | Protein | 6e-108 | 53 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 1e-108 | 53 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 1e-108 | 53 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 1e-108 | 53 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 1e-108 | 53 |
| int | NP_807963.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 3e-98 | 51 |
| int | NP_458759.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 3e-98 | 51 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 7e-104 | 51 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 7e-104 | 51 |
| APECO1_1051 | YP_853069.1 | phage integrase | Not tested | PAI IV APEC-O1 | Protein | 5e-67 | 47 |
| int | CAA08754.1 | integrase | Not tested | HPI | Protein | 4e-89 | 46 |
| int | YP_002346908.1 | integrase | Not tested | HPI | Protein | 2e-88 | 46 |
| y2393 | NP_669700.1 | prophage integrase | Not tested | HPI | Protein | 2e-88 | 46 |
| int2 | NP_993013.1 | integrase | Not tested | HPI | Protein | 2e-88 | 46 |
| int | CAA21384.1 | - | Not tested | HPI | Protein | 2e-88 | 46 |
| int | CAB59974.1 | integrase | Not tested | HPI | Protein | 1e-88 | 46 |
| intB | AAD37509.1 | P4-like integrase | Not tested | PAI IV 536 | Protein | 2e-79 | 46 |
| unnamed | ABR13507.1 | phage integrase | Not tested | PAGI-6 | Protein | 6e-87 | 46 |
| unnamed | AAD17660.1 | unknown | Not tested | HPI | Protein | 1e-85 | 45 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 4e-65 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B4773 | YP_002149406.2 | integrase | VFG1536 | Protein | 5e-107 | 56 |
| SeAg_B4773 | YP_002149406.2 | integrase | VFG0626 | Protein | 9e-110 | 54 |
| SeAg_B4773 | YP_002149406.2 | integrase | VFG1693 | Protein | 5e-111 | 54 |
