Gene Information

Name : SeAg_B3749 (SeAg_B3749)
Accession : YP_002148470.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : ribokinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0524
EC number : -
Position : 3633985 - 3635199 bp
Length : 1215 bp
Strand : +
Note : identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543

DNA sequence :
ATGAAATTTGAACGCCATCATAGAATATTGAAGGAACTCAGTATTTCGGGAGTTGTAAAAGTTTCAAATCTGGCGAAAAG
TCTCAAGGTAACAAAGGAAACTATTCGTTCAGATCTCAATGAACTTGCCGGACAGGGATATCTTACTCGCTGTCATGGTG
GTGCATTTATTACCCTTGATTCTCTTGATAACGTCGCAAAAAATGAAATTGCTTATGTGCTGGAAAAATATGAATCAGCG
CAGAAAATAAAAAAAGGTCTCTCTGCCATGAAAAATAATGTATGTGTTATTGGCTCGTTCAATGTTGATATTATCAGTTA
TCTACCGAGATTACCCTCAACGGGAGAATCATTGCTGGCCGATAAATTTATTTTTTCACCCGGCGGTAAGGGATGTAATC
AGGCATTAGCAGCAAGCTATGCCGACTCTGATGTGCATTTTATTACTAAAGTCGGCTCAGATCATTTTAGTGATTACGCC
ATTAATTTTATAAACTCATCAAAAATCCATAAAAGTGTTATCTACCAGACCAAAGAAACACAAACAGGTACAGCAACTAT
CATGGTGAATGGAGATACCGGAGATAACGTCATCGCTATCTACCCTGGCGCCAACATGACAATCTCCCCTGATGAAATCA
CCATTCAAAAAGAAGCCATTGTTCATTCAGATATTGTTCTTGTCCAACTGGAGACGAATTACGAAGCGCTGCAGCAAACA
ATTCGCCTCGCACAAAAAAATGACATACCGGTCATCATCAATCCAGCGCCATACAATGACATGGTTAACACTATCATTGA
TAACATTGACTATATTACGCCAAATGAAACGGAAGCAGGCCTGCTGGCCAATATGGCGGTTAATGATATCGAATCAGCCA
AATGCGCGGCCAAAATTATTCATCAGAAAGGCGTCAAAAATACCATTATTACATTAGGTAGCAAAGGTTCGCTTGCTTAT
GATGGCACACAATTCATCTATTCCCCGGCATTTCCGGCAGTTGTAAAAAATACTGCGGGAGCGGGTGACGCTTTCAATGG
CGCCCTCGCATCTGGTCTTGCAAAAGGAAAGTCACTGGCATCCGCATTGTGCTACGCCAGCGCATTTGCCTCACTTGCGG
TTGAAACGCCTAATGCCTCTGATATGCCGGAAAACGACTCCGTTCTTCATCGTATTCAGGGTTCACATTACAAACAAACT
ATTTCTACTCACTAA

Protein sequence :
MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAGQGYLTRCHGGAFITLDSLDNVAKNEIAYVLEKYESA
QKIKKGLSAMKNNVCVIGSFNVDIISYLPRLPSTGESLLADKFIFSPGGKGCNQALAASYADSDVHFITKVGSDHFSDYA
INFINSSKIHKSVIYQTKETQTGTATIMVNGDTGDNVIAIYPGANMTISPDEITIQKEAIVHSDIVLVQLETNYEALQQT
IRLAQKNDIPVIINPAPYNDMVNTIIDNIDYITPNETEAGLLANMAVNDIESAKCAAKIIHQKGVKNTIITLGSKGSLAY
DGTQFIYSPAFPAVVKNTAGAGDAFNGALASGLAKGKSLASALCYASAFASLAVETPNASDMPENDSVLHRIQGSHYKQT
ISTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 7e-156 81
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 3e-71 48
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 2e-71 48
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 1e-71 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeAg_B3749 YP_002148470.1 ribokinase VFG0483 Protein 9e-72 48