Gene Information

Name : kdsD (SeAg_B3505)
Accession : YP_002148240.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : D-arabinose 5-phosphate isomerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0794
EC number : 5.3.1.13
Position : 3398173 - 3399159 bp
Length : 987 bp
Strand : +
Note : identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393

DNA sequence :
ATGTCGCATTTAGCGTTGCAACCGGGGTTTGACTTTCAGCAGGCAGGCAAAGAGGTCCTGGAAATTGAACGTGAAGGCCT
GGCGGAGCTTGATCAATATATCAACCAGCATTTCACGCTGGCCTGTGAAAAAATGTTCAACTGCACCGGAAAAGTGGTGG
TCATGGGGATGGGAAAATCCGGTCATATCGGACGGAAAATGGCCGCCACGTTCGCCAGTACCGGCACCTCTTCCTTTTTT
GTACATCCAGGCGAAGCCGCGCACGGCGATTTGGGGATGGTTACGCCGCAGGATGTGGTTATCGCTATCTCCAACTCCGG
CGAATCCAGCGAGATCGCGGCGCTAATACCGGTGCTTAAACGGCTGCACGTACCGTTAATTTGCATTACCGGGCGACCGG
AAAGCAGCATGGCGCGTGCGGCAGATGTGCATCTGTGTGTTAAAGTGCCCAAAGAAGCGTGTCCGTTAGGCCTGGCGCCT
ACCACTAGTACCACCGCAACGCTGGTGATGGGCGACGCTCTCGCCGTGGCGTTGTTAAAAGCGCGCGGCTTTACCGCCGA
GGATTTCGCTCTATCGCATCCTGGCGGCGCGCTGGGACGTAAGCTACTGCTGCGCGTAAGCGATATTATGCATACTGGCG
ATGAAATCCCGCATGTTAATAAACATGCCACCCTGCGTGATGCGCTGTTAGAAATTACGCGTAAAAATCTCGGTATGACC
GTCATTTGCGATGAATCCATGAAGATCGACGGTATCTTCACCGACGGCGATTTACGTCGCGTGTTCGATATGGGCGGCGA
TATGCGCCAGTTGGGGATCGCCGAGGTGATGACGCCAGGGGGCATTCGCGTGCGTCCCGGTATTCTCGCTGTCGATGCGC
TGAATTTAATGCAGTCCCGCCATATCACCTCCGTACTGGTTGCTGATGGCGACCAGTTACTCGGTGTGTTACATATGCAT
GATCTCCTGCGTGCAGGCGTCGTGTAG

Protein sequence :
MSHLALQPGFDFQQAGKEVLEIEREGLAELDQYINQHFTLACEKMFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFF
VHPGEAAHGDLGMVTPQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAP
TTSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVNKHATLRDALLEITRKNLGMT
VICDESMKIDGIFTDGDLRRVFDMGGDMRQLGIAEVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDQLLGVLHMH
DLLRAGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsF CAE85210.1 KpsF protein Virulence PAI V 536 Protein 8e-47 41
kpsF AAZ04466.1 polysialic capsule transport protein Virulence PAI I APEC-O1 Protein 3e-47 41
kpsF YP_854329.1 polysialic acid capsule synthesis protein KpsF Not tested PAI I APEC-O1 Protein 5e-47 41