|
Name : SeAg_B3005 (SeAg_B3005) Accession : YP_002147781.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Virulence Product : type III effector protein IpaD/SipD/SspD Function : - COG functional category : - COG ID : - EC number : - Position : 2935281 - 2936312 bp Length : 1032 bp Strand : - Note : identified by match to protein family HMM PF06511; match to protein family HMM TIGR02553 DNA sequence : ATGCTTAATATTCAAAATTATTCCGCTTCTCCTCATCCGGGGATCGTTGCCGAACGGCCGCAGACTCCTTCGGCGAGCGA GCACGCCGAGATTGCCGTGGTACCGTCTACCACAGAACATCGCGGTACAGATATCATTTCATTATCGCAGGCGGCTACTA AAATCCAGCAGGCACAGCAGACGCTGCAGTCAACGCCACCGATCTCTGAAGAGAATAATGACGAGCGCACGCTGGCGCGC CAGCAGTTGACCAGCAGCCTGAATGCGCTGGCGAAGTCTGGCGTGTCATTATCCGCAGAACAAAATGAGAACCTGCGGAG CGCGTTTTCTGCGCCGACGTCGGCCTTATTTAGCGCTTCGCCTATGGCGCAGCCGAGAACAACCATTTCTGATGCTGAGA TTTGGGATATGGTTTCCCAAAATATATCGGCGATAGGTGACAGCTATCTGGGCGTTTATGAAAACGTTGTCGCAGTCTAT ACCGATTTTTATCAGGCCTTCAGTGACATTCTGTCCAAAATGGGAGGCTGGTTATTACCAGGTAAGGACGGTAATACCGT TAAGCTAGATGTTACCTCACTCAAAAATGATTTAAACAGTTTAGTCAATAAATATAATCAAATAAACAGTAATACCGTTT TATTCCCAGCGCAGTCAGGCAGCGGCGTTAAAGTAGCTACTGAAGCGGAAGCGAGACAGTGGCTCAGTGAATTGAATTTG CCGAATAGCTGCCTGAAATCTTATGGATCCGGTTATGTCGTCACCGTTGATCTGACGCCATTACAAAAAATGGTTCAGGA TATTGATGGTTTAGGTGCGCCGGGAAAAGATTCAAAACTCGAAATGGATAACGCCAAATATCAAGCCTGGCAGTCGGGTT TTAAAGCGCAGGAAGAAAATCTGAAAACCACATTACAGACGCTGACGCAAAAATATAGCAATGCCAATTCATTATACGAC AACCTGGTAAAAGTGCTGAGCAGTACGATAAGTAGCAGCCTGGAAACCGCCAAAAGCTTCCTGCAAGGATAA Protein sequence : MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDIISLSQAATKIQQAQQTLQSTPPISEENNDERTLAR QQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVY TDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEENLKTTLQTLTQKYSNANSLYD NLVKVLSSTISSSLETAKSFLQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sipD | YP_217802.1 | cell invasion protein | Virulence | SPI-1 | Protein | 3e-138 | 99 |
| sipD | NP_461804.1 | translocation machinery component | Virulence | SPI-1 | Protein | 2e-139 | 99 |
| sipD | NP_457277.1 | pathogenicity island 1 effector protein | Virulence | SPI-1 | Protein | 2e-123 | 89 |
| sipD | NP_806486.1 | pathogenicity island 1 effector protein | Virulence | SPI-1 | Protein | 2e-123 | 89 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B3005 | YP_002147781.1 | type III effector protein IpaD/SipD/SspD | VFG0544 | Protein | 1e-139 | 99 |
