Gene Information

Name : SeAg_B0026 (SeAg_B0026)
Accession : YP_002145004.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : outer membrane usher protein FimD
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 25760 - 28426 bp
Length : 2667 bp
Strand : +
Note : identified by match to protein family HMM PF00577

DNA sequence :
TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC
CAGCGTAACTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCACTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATT
TCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACCTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGG
ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCAACCAGAGACATTGCCTTCCAGGCGGTGAAAACGACGGG
AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG
GGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC
TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC
GAAATACTGGGATGAAGGTATTAATGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCCCAG
GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC
ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT
CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCCTTCCTTTTCGCGGGCTAC
AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCTTCGCACCGACCATTCACGGCATTGCCAGAAGCAAC
GCGCAAGTGACCATTCGGCAAAACGGCTACATCATTAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT
CTATCCCACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAGTCCGACGGTTCTATTAATCGCTATAACGTGCCCT
ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGTTGAAGTATGCGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGT
CAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA
ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA
CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA
CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTACACGCTGGATGATACCACGTGGAA
ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAATCTTT
ATTATACCAGGAGGGGGAAAGTACAACTCGATATCAATCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGT
CAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGGATTGCATG
GAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC
TAAGTCAATGGCTGCAACACGATGATGAGGTCACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA
GAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG
CTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCCAGCCTGGAATACGATGGCGCAAAAGGCAACGCCAATATTGGCT
ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAACTATGGCCTGAGCGGCGGCCTGGTGGCGCACGCGCATGGAGTG
ACGCTAAGCCAGCCGTTAGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAATGTCGGCGTTGTCGACCAGCC
GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACAACATATCGCCAAAACCGTATGGCGCTGGACG
TTAACGCCATGGCGGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC
CGCTTTAAAGCGCGAGTCGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT
GACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAGGCCGGGGAAGTCTATCTTTCCGGGTTGTCAGCGCAAGGCG
TTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGCGTCGCATCCTATCATCTCTCTTCCTCCCGTCAGATTCTG
AGTCGACAACATGCGGAGTGTCATTAA

Protein sequence :
MAQRRQHAFVQLHDVMRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG
MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR
FDFAQQRLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYS
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN
AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS
QKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS
QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK
EHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGV
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA
RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQIL
SRQHAECH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 51
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeAg_B0026 YP_002145004.1 outer membrane usher protein FimD VFG0876 Protein 0.0 52
SeAg_B0026 YP_002145004.1 outer membrane usher protein FimD VFG1645 Protein 0.0 50
SeAg_B0026 YP_002145004.1 outer membrane usher protein FimD VFG0912 Protein 0.0 50
SeAg_B0026 YP_002145004.1 outer membrane usher protein FimD VFG0446 Protein 1e-178 49
SeAg_B0026 YP_002145004.1 outer membrane usher protein FimD VFG0454 Protein 5e-163 43