|
Name : SeAg_B0234 (SeAg_B0234) Accession : YP_002145201.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Virulence Product : chaperone protein PapD Function : - COG functional category : N : Cell motility COG ID : COG3121 EC number : - Position : 242519 - 243271 bp Length : 753 bp Strand : + Note : identified by match to protein family HMM PF00345 DNA sequence : ATGATGCCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGTAGCGCTCAGGCCGCCAT CGCGCCCGATCGCACCCGCCTGGTGTTTCGCGGCGAAGATAAATCGATAAGCGTCGATCTGAAAAACGCCAACAGCAAAC TGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCACCTTTAATCGTCGTCCCACCGGTC CAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGCGTCGCTCCCCCAGGATCGGGA AACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGCTGCAAATCGCCCTGCAAACGC GCATCAAAGTTTTTTACCGTCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCATGGCAATACAAGATCACCCTTCAG CGTCAGGGCAATGGCTATCAGGTGAGCAATCCGACCGGTTACTACGTGGTGTTAAGCAACGCCAGCAACCGCATGGACGG CACACCGGCCAGAGGCTTTAGCCCATTAGTGATTGCACCAAAAAGCAACGTGACGCTGGGAGGGGACGCCAGTGAATTAG GTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTTAACTGTACTGACAACAGTTGT GCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA Protein sequence : MMPLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ RQGNGYQVSNPTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC AVDEAKSRKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfD | CAD42028.1 | PrfD protein | Virulence | PAI II 536 | Protein | 4e-48 | 45 |
| papD | YP_854253.1 | pilus assembly protein chaperone PapD | Virulence | PAI I APEC-O1 | Protein | 8e-48 | 45 |
| papD | AAZ04423.1 | P pilus chaperone | Virulence | PAI I APEC-O1 | Protein | 6e-48 | 45 |
| papD | AAL67413.1 | PapD | Virulence | PAI II CFT073 | Protein | 8e-48 | 44 |
| papD_2 | NP_757033.1 | PapD protein | Virulence | PAI II CFT073 | Protein | 1e-47 | 44 |
| papD | YP_002414014.1 | Chaperone protein PapD | Not tested | Not named | Protein | 1e-47 | 44 |
| pixD | CAE85158.1 | PixD protein | Not tested | PAI V 536 | Protein | 1e-48 | 44 |
| papD | NP_755464.1 | PapD protein | Virulence | PAI I CFT073 | Protein | 6e-43 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B0234 | YP_002145201.1 | chaperone protein PapD | VFG1547 | Protein | 2e-48 | 45 |
| SeAg_B0234 | YP_002145201.1 | chaperone protein PapD | VFG0896 | Protein | 5e-48 | 44 |
| SeAg_B0234 | YP_002145201.1 | chaperone protein PapD | VFG0885 | Protein | 2e-43 | 43 |
