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Name : SeAg_B0233 (SeAg_B0233) Accession : YP_002145200.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 239844 - 242501 bp Length : 2658 bp Strand : + Note : identified by match to protein family HMM PF00577 DNA sequence : ATGGCTCACTATAAAAAATTTCGTCTGAGCACGCTTGCGGCCGTGGTGGGTATTGTTCTGGCTGTCGGTCCGGAAAATAG CTACGCGGAAGCGCCCATTCAATTTAATACCCGATTTCTTGATGTTAAAGATGATGCCAGCCTGGATCTCTCCCGTTTTT CCCGTAAAGGCTACATTATGCCGGGGAGCTATCATCTCCAGGTGCTGGTCAATCAGAGTCAAATTGCCCAGGATAATATT ATTACGTATTCCGTTGATAATAACGATCCTGATAATACATATCCCTGTTTATCGCCTGAACTGGTATCGCTGCTGGGGTT AAAACCTGAAATAGCAGATAAAATGATCTGGATAAATGCCGGTCAGTGTCTGCAACCAGAACAACTGGAAGGGATGGAAA CCCAAACGGATTTAAGCCAGTCAACGCTGACGGTGATTATTCCGCAGGCCTATCTGGAATACAGCGATGAAGAGTGGGAT CCACCTTCCCGCTGGGATGAAGGGATTCCCGGCGTGTTATTTGACTACAACGTTAACAGCCAGTGGCGACATGCTGAACA TGATGACGGCGATGAATATGACATCAGCGGCAACGGCACGGTGGGTGCCAACCTCGGCGCGTGGCGTTTGCGCGCGGACT GGCAGGCTAACTATCGTCACGAAAATGACAGCGAAGATAAAGACAACTTTGGCTCCAGTTCCGAACAGAACTGGGACTGG AACCGCTATTACGCCTGGCGGGCGATCCCGCAGCTCCGGGCACAGCTAACGCTGGGCGAAGGATCGCTGGAATCCGATAT TTTCGACGGCTTTAACTATGTTGGCGGCAGCCTTATTACCGACGATCAGATGTTACCGCCTAATCTGCGCGGCTACGCCC CGGATATATCAGGCGTGGCGCGCACCAACGCCAAAGTCACCGTGACCCAGCGCGGGCGGGTGATTTATGAGTCGCAGGTC CCGGCAGGGCCGTTTCGCATTCAGGATATTAATGAAACGGTATCCGGCGATCTACACGTCAAAATTGAAGAACAAAGCGG TCAGGTGCAGGAATATGACGTCAGCACCGCCTCCATTCCGTTTCTGACCCGTCCCGGCCAGGTGCGCTACAAGTTGGCCG CCGGGCGACCGCAGGACTGGGATCACAATATGGAAGGCGGCTTTTTCACTTCAGCCGAAGCCTCCTGGGGGATCGCTAAC GGCTGGTCGCTGTACGGCGGCGCCATCGGCGAGCAGGATTATCAGGCGCTGGCGTTAGGACTGGGGCGCGATCTGGCGCT GCTGGGCGCGTTTTCCGTCGATGTCACCCATTCCCGTGCGACGCTGCCAGAGGGTAGCGCCTACGGCGACGGCACCATTC AGGGTAACTCGTTCCGTGCCAGCTACGCTAAAGATTTTGATGATATAGACAGCCGTCTGACGTTTGCTGGTTATCGCTTT TCCGAAGAAAACTACATGACGATGGACGAGTTTATCGATACGCATAATGACGATAACGATCGTCAGCGCACCGGCCACGA TAAAGAGATGTATACCCTGACGTACAGCCAGAACTTTTCGGCAATAAACGTCAACGCCTATATCAACTACACCCATCGCA CCTACTGGAACCAACCCAACCAGGACAGCTATAACCTGACGCTGTCGCACTATTTCGATGTCGGCGAGGTGCGCGGGATC AGTCTGTCGGTGAACGGTTTTCGCAACGAATATGACAATGAACGCGATGACGGCGTGTACGTCTCGCTCAGTATTCCGTG GGGCAACAACCGCACGCTGAGCTACAACGGCTCCTTTAGCGATGACAACAACAGCAATCAGGTCGGCTATTACGAGCGCA TTGACGATCGCAATAACTACCAGATCAACGCTGGCCGCGCGGATAACGGCGCGACTCTCGACGGCTATTACCGTCATCAA GCGAGCTATGCCGACATTGACGTCAGTGCGAACTATCAGGAAGGCGACTATACCTCCGGCGGGCTGAACATCCAGGGCGG CGCGACGCTGACTGCTAAAGGCGGGGCGCTGCACCGTACCAGCGTCAACGGCGGCTCGCGGCTGCTGGTGGATGTCGGCG ATGAAGCGAACGTACCCATCTCCGGCTACAGCACGCCGGTATATACCAACGCGTTTGGTAAAGCCGTCATTGTTGACGTC AACGACTACTACCGCAACCAGGTGAAAATCGACATTACCCAGTTGCCGGAAGACGCGGAAGCAACCCTCTCCATCGCTCA GGCGACCCTGACGGAAGGGGCGATCGGTTATCGCCGCCTGGAGGTGCTCAGCGGTAAAAAAGCCATGGCCAGTATCCGCC TGCGCGATGGCGGCACGCCGCCCTTCGGCGCGGAGGTTTACAACAGTCGCCAGCAACAGTTAGGGATCGTAGGTGAAGAC GGCAGCGTTTATCTGATCGGCATTAACCCCGGCGAGCGGTTGCAGGTGACATGGGAAGGTAAAACGCAGTGTGAAGCGGC GTTGCCCGACCCGCTGCCGGGCGATCTGTTTAGCGGCCTGCTGCTGCCGTGCATCGGCGACGCTTCATCACCTGAGGCAA CGCAGCCCGCAGAGAAACCATTACTCCAGCTTCATACGCAGCGGCTGACGTCTTCAACGCAACCCGAAGCGCTCTCTTCT CGTTATCCAACACATTGA Protein sequence : MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIAQDNI ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPEQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRHQ ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV NDYYRNQVKIDITQLPEDAEATLSIAQATLTEGAIGYRRLEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGED GSVYLIGINPGERLQVTWEGKTQCEAALPDPLPGDLFSGLLLPCIGDASSPEATQPAEKPLLQLHTQRLTSSTQPEALSS RYPTH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 8e-160 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-154 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 6e-154 | 43 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 5e-154 | 43 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-154 | 43 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-154 | 43 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-154 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B0233 | YP_002145200.1 | fimbrial usher protein | VFG1548 | Protein | 1e-154 | 43 |
| SeAg_B0233 | YP_002145200.1 | fimbrial usher protein | VFG0884 | Protein | 8e-155 | 43 |
| SeAg_B0233 | YP_002145200.1 | fimbrial usher protein | VFG0895 | Protein | 8e-155 | 43 |
