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Name : SeAg_B0207 (SeAg_B0207) Accession : YP_002145174.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 213571 - 216117 bp Length : 2547 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGCGCAAAAGGCAACACCGGGTATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACACGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAAAACCATGGGCAGGCGAGTCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAGCTGCCTGGCACCTATTACGTCACTATCAATATCAATAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTCCAGGAACTAAAAGA TAACAGCGTCAAAACCGACCTTTTTCCAACCCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGTTATCCCCGGCGCCA GCCAGCGGTTTGATTTTCAGCAACAGACATTATCAGTAAGCATCCCGCAACTCTACATCGCCAACAACGCGCGCGGCTAC GTGCCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTAATGCTGAACTACAGTTTCAGCGGCTATAAAGAGTACGGTTC CAGCGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGTTCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTTACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGCTCAAACG CGCAGGTTATCGTGCGGCAAAACGGCTATATCGCCTATCAAACCGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTATGACGTAACGGTAAAAGAAGCCGACGGCAGCGAACAGCATTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATACCGCGATTATAACAACC ACACGCTGGACGACTTCGGCCAGGCAACCCTGCTGTACGGCCTGCCGTGGGGCATCACCCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGCAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAATCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCCTCGGTCAACCAGCAAATTAGCGATACGCT CGGTTCCTTAACGCTAAGTTGGGTCAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAGTCTCTGAGCGCCAGTTACA ACAATAGCTGGGGTCCGGTGAGCTATTCGCTGAGCTACAGCTATAACAAAAACACCTACCAGTACCGATCGGACAATGAC GATGATGACAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGTTGTCGCTGCACGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCCACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAAAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTATAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCGGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACGCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCTGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTATCCGACGCGTAATGCGGTGGTGCGCGCGTCGTATGACACGCATAAGGGCTATCGCGTGCTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTGCTGGTGAACTGGGGAAGCGCCTCTTGCCGCGC GGATTACCGCCTTGATATCAGCAAAAATATGAACGGCATCGTGATGGCGAACGCCGTCTGCCAGTGA Protein sequence : MRKRQHRVFYLSRCAVCIALGSTFAHVAWARDYFNPAFIENHGQASRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNSVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQTLSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYSLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRASYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-125 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B0207 | YP_002145174.1 | outer membrane usher protein FimD | VFG0454 | Protein | 7e-139 | 42 |
| SeAg_B0207 | YP_002145174.1 | outer membrane usher protein FimD | VFG1645 | Protein | 2e-125 | 41 |
| SeAg_B0207 | YP_002145174.1 | outer membrane usher protein FimD | VFG0912 | Protein | 2e-126 | 41 |
