Gene Information

Name : SeAg_B1936 (SeAg_B1936)
Accession : YP_002146794.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 1880656 - 1881213 bp
Length : 558 bp
Strand : -
Note : identified by match to protein family HMM PF06316

DNA sequence : 
ATGAAAAATATTATTTTATCCACTTTAGTTATTACTACAAGCGTTTTGGTTGTAAATGTTGCACAGGCCGATACTAACGC
CTTTTCCGTGGGGTATGCACAAAGTAAAGTTCAGGATTTCAAAAATATCCGAGGGGTAAATGTGAAATACCGTTATGAGG
ATGACTCTCCGGTAAGTTTTATTTCCTCGCTAAGTTACTTATATGGAGACAGCCAGGCTTCCGGGTCTATTGAGCCTGAA
GGTATTCATTACCATGACAAGTTTGAGGTGAAGTACGGCTCTTTTATGGTTGGGCCAGCCTATCGATTGTCTGACAATTT
TTCGTTATACGCGCTGGCGGGTGTCGGCACGGTAAAGGCGACGTTTAAAGAACATTCCACTCAGGATGGCGATTCTTTTT
CTAACAAAATTTCCTCAAGGAAAACGGGATTTGCCTGGGGCGCGGGTGTACAGATGAATCCGCTGGAGAATATCGTCGTT
GATGTTGGGTATGAAGGAAGCAACATCTCCTCTACAAAAATAAACGGCTTCAACGTCGGGGTTGGATACCGTTTCTGA

Protein sequence : 
MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDSQASGSIEPE
GIHYHDKFEVKYGSFMVGPAYRLSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVV
DVGYEGSNISSTKINGFNVGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 1e-70 99
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 1e-27 48
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 5e-28 48
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 3e-27 47
pagC AGI37342.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37344.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37350.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 6e-19 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37349.1 PagC Virulence OI-122 Protein 6e-19 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 6e-19 43
pagC AGI37348.1 PagC Virulence OI-122 Protein 4e-20 43
pagC AGI37337.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37351.1 PagC Virulence OI-122 Protein 4e-20 43
pagC AGI37343.1 PagC Virulence OI-122 Protein 9e-19 42
pagC AGI37353.1 PagC Virulence OI-122 Protein 9e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeAg_B1936 YP_002146794.1 virulence membrane protein PagC VFG0442 Protein 5e-37 54