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Name : SeAg_B1778 (SeAg_B1778) Accession : YP_002146647.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 1734088 - 1735581 bp Length : 1494 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : ATGATAGTAAATAAACGTTTAATCTTAATTTTACTATTTATACTCAATACAGCAAAGAGTGATGAGTTATCATGGAAAGG TAATGACTTCACCCTTTATGCCAGACAAATGCCATTAGCAGAGGTTTTACATCTGCTCTCAGAGAACTATGATACGGCTA TTACTATTAGCCCATTGATAACAGCTACATTTAGTGGAAAAATTCCGCCTGGACCACCGGTCGATATTTTGAATAACCTG GCAGCACAATATGATTTGCTTACCTGGTTTGATGGCAGCATGTTATATGTATATCCTGCATCGTTATTAAAACATCAGGT TATCACTTTCAATATTTTATCTACTGGGCGGTTCATTCATTACTTACGCAGCCAGAATATCCTTTCATCACCGGGATGCG AGGTTAAAGAAATTACCGGTACCAGAGCTGTGGAGGTGAGCGGTGTTCCCAGCTGTCTGACTCGTATTAGTCAATTAGCT TCAGTGCTGGATAATGCGTTAATCAAACGAAAAGACAGTGCGGTGAGTGTAAGTATATACACGCTTAAGTATGCCACTGC GATGGATACCCAATACCAATATCGCGATCAGTCCGTCGTGGTTCCTGGGGTCGTGAGTGTATTGCGTGAGATGAGTAAAA CCAGCGTCCCGGCGTCATCGACGAACAATGGTTCACCCGCTACACAGGCATTGCCCATGTTTGCTGCCGACCCACGCCAG AATGCAGTGATCGTTCGTGATTATGCGGCCAATATGGCCGGGTATCGGAAACTCATCACAGAATTAGATCAACGCCAGCA GATGATAGAGATTTCGGTGAAAATTATCGATGTTAATGCTGGAGATATTAACCAGTTAGGCATCGACTGGGGAACGGCAG TGTCGCTGGGTGGCAAGAAAATTGCGTTCAATACAGGTTTGAATGACGGCGGTGCTAGCGGTTTTTCAACGGTAATCAGC GATACCTCAAACTTTATGGTGCGTTTGAATGCCCTGGAAAAAAGCTCTCAGGCTTATGTACTTTCCCAGCCATCTGTGGT GACTTTAAATAATATCCAGGCTGTGCTGGATAAAAATATTACTTTCTATACCAAACTGCAGGGAGAAAAAGTGGCTAAAC TTGAATCCATCACTACGGGTTCTTTGTTGCGCGTTACACCTCGCTTGTTAAATGACAATGGCACGCAAAAAATAATGCTT AATCTTAATATTCAGGATGGACAACAAAGTGATACGCAAAGCGAAACAGATCCGCTACCCGAAGTGCAAAATTCTGAAAT TGCTTCGCAAGCCACATTATTGGCCGGACAAAGTCTATTGCTGGGAGGATTTAAACAAGGTAAACAAATCCACTCGCAAA ACAAAATCCCTTTATTGGGCGATATTCCTGTCGTAGGCCATTTGTTTCGCAATGATACGACTCAAGTACATAGTGTAATC AGGCTGTTTTTGATTAAAGCCTCAGTAGTAAATAATGGCATATCTCATGGTTAA Protein sequence : MIVNKRLILILLFILNTAKSDELSWKGNDFTLYARQMPLAEVLHLLSENYDTAITISPLITATFSGKIPPGPPVDILNNL AAQYDLLTWFDGSMLYVYPASLLKHQVITFNILSTGRFIHYLRSQNILSSPGCEVKEITGTRAVEVSGVPSCLTRISQLA SVLDNALIKRKDSAVSVSIYTLKYATAMDTQYQYRDQSVVVPGVVSVLREMSKTSVPASSTNNGSPATQALPMFAADPRQ NAVIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLNDGGASGFSTVIS DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVI RLFLIKASVVNNGISHG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| spiA | AAC44301.1 | SpiA | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaC | YP_216402.1 | secretion system apparatus protein SsaC | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaC | NP_460359.1 | outer membrane secretin precursor | Virulence | SPI-2 | Protein | 0.0 | 99 |
| spiA | NP_456134.1 | putative outer membrane secretory protein | Virulence | SPI-2 | Protein | 0.0 | 99 |
| spiA | NP_805065.1 | outer membrane secretory protein | Virulence | SPI-2 | Protein | 0.0 | 99 |
| YPO0257 | YP_002345337.1 | type III secretion protein | Virulence | Not named | Protein | 9e-125 | 53 |
| escC | YP_003232146.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 3e-96 | 45 |
| escC | AAK26708.1 | EscC | Virulence | LEE | Protein | 2e-96 | 45 |
| escC | AAL57535.1 | EscC | Virulence | LEE | Protein | 2e-96 | 45 |
| escC | CAC81855.1 | EscC protein | Virulence | LEE II | Protein | 2e-96 | 45 |
| escC | CAI43881.1 | EscC protein | Virulence | LEE | Protein | 2e-96 | 45 |
| escC | YP_003223482.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 3e-96 | 45 |
| escC | AFO66299.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-100 | 44 |
| escC | AFO66408.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-100 | 44 |
| unnamed | AAL06362.1 | EscC | Virulence | LEE | Protein | 2e-95 | 44 |
| escC | ACU09465.1 | type III secretion outer membrane pore YscC/HrcC family | Virulence | LEE | Protein | 3e-95 | 44 |
| escC | YP_003236095.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 6e-95 | 44 |
| escC | NP_290275.1 | hypothetical protein | Virulence | LEE | Protein | 4e-95 | 44 |
| escC | AAC38377.1 | EscC | Virulence | LEE | Protein | 3e-94 | 44 |
| ECs4575 | NP_312602.1 | EscC | Virulence | LEE | Protein | 4e-95 | 44 |
| escC | AAC31520.1 | L0041 | Virulence | LEE | Protein | 3e-95 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeAg_B1778 | YP_002146647.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0495 | Protein | 0.0 | 99 |
| SeAg_B1778 | YP_002146647.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0819 | Protein | 2e-95 | 44 |
| SeAg_B1778 | YP_002146647.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0723 | Protein | 2e-94 | 44 |
