Gene Information

Name : SeAg_B1774 (SeAg_B1774)
Accession : YP_002146643.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : S : Function unknown
COG ID : COG1729
EC number : -
Position : 1730990 - 1731463 bp
Length : 474 bp
Strand : -
Note : identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552

DNA sequence : 
ATGAAAAAAGACCCGACCCTACAACAGGCTCATGACACGATGCGATTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTT
GGATGACGATGTTACACAGCCGCTTAATACTCTGTATCGCTATGCCATGCAGCTTATGGAGGTAAAAGAGTTCGCCGGCG
CAGCGCGACTTTTTCAATTGCTGACGATATATGATGCCTGGTCATTTGACTACTGGTTTCGGTTAGGGGAATGCTGCCAG
GCCCAAAAACATTGGGGGGAAGCGATATACGCTTATGGACGCGCGGCGCAAATTAAGATTGATGCGCCGCAGGCGCCATG
GGCCGCAGCGGAATGCTACCTCGCGTGTGATAACGTTTGTTATGCAATAAAAGCGTTAAAGGCCGTGGTGCGTATTTGCG
GCGAGGTCAGTGAACATCAAATTCTCCGACTGCGTGCAGAAAAGATGTTACAGCAACTTTCTGACAGGAGCTAA

Protein sequence : 
MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ
AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRLRAEKMLQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 3e-69 99
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 8e-70 99
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 4e-70 99
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 4e-70 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 2e-69 99
sscA CAA12186.1 SscA Virulence SPI-2 Protein 2e-69 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeAg_B1774 YP_002146643.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 1e-69 99