Gene Information

Name : epaP (SeAg_B1754)
Accession : YP_002146623.1
Strain : Salmonella enterica SL483
Genome accession: NC_011149
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1716593 - 1717240 bp
Length : 648 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGTCTTTACCCGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTGCTTTCAATACTGCCTCTCATTATCGTCATGGG
AACTTCTTTCCTTAAACTGGCGGTGGTATTTTCGATTTTACGAAATGCTCTGGGTATTCAACAAGTTCCCCCAAATATCG
CACTGTATGGCCTTGCGCTTGTACTTTCCTTATTCATTATGGGGCCGACGCTATTAGCTGTAAAAGAGCGCTGGCATCCG
GTTCAGGTCGCTGGCGCTCCTTTCTGGACGTCTGAGTGGGACAGTAAAGCATTAGCGCCTTATCGACAGTTTTTGCAAAA
AAACTCTGAAGAGAAGGAAGCCAATTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGACATAAAAAGAAAGATAA
AACCTGATTCTTTGCTCATATTAATTCCGGCATTTACGGTGAGTCAGTTAACGCAGGCATTTCGGATTGGATTACTTATT
TATCTTCCCTTTCTGGCTATTGACCTGCTTATTTCAAATATACTGCTGGCTATGGGGATGATGATGGTGTCGCCGATGAC
CATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCGAAATTGGTACAGAGCT
TTTCATGA

Protein sequence : 
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAKLVQSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-85 99
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-85 99
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-85 99
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-85 99
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-86 99
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-57 60
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-48 54
escR AAK26700.1 EscR Virulence LEE Protein 7e-45 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-44 53
escR AAL57527.1 EscR Virulence LEE Protein 7e-45 53
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-44 53
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-45 53
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-45 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-45 53
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-43 53
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-43 53
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-44 53
escR AAC31528.1 L0049 Virulence LEE Protein 7e-45 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-44 53
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-45 52
escR AAC38369.1 EscR Virulence LEE Protein 5e-44 52
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-44 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-35 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-35 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-28 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-28 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-35 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-35 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-35 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-35 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-35 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 2e-31 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-30 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-30 41
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-23 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epaP YP_002146623.1 type III secretion system protein VFG0519 Protein 3e-86 99
epaP YP_002146623.1 type III secretion system protein VFG0188 Protein 1e-50 56
epaP YP_002146623.1 type III secretion system protein VFG0394 Protein 7e-47 55
epaP YP_002146623.1 type III secretion system protein VFG0827 Protein 3e-45 53
epaP YP_002146623.1 type III secretion system protein VFG0715 Protein 2e-44 52
epaP YP_002146623.1 type III secretion system protein VFG0044 Protein 5e-40 46
epaP YP_002146623.1 type III secretion system protein VFG1259 Protein 9e-32 42
epaP YP_002146623.1 type III secretion system protein VFG0551 Protein 4e-24 41