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Name : icmF (SeAg_B1099) Accession : YP_002146007.1 Strain : Salmonella enterica SL483 Genome accession: NC_011149 Putative virulence/resistance : Unknown Product : type VI secretion protein IcmF Function : - COG functional category : S : Function unknown COG ID : COG3523 EC number : - Position : 1095358 - 1098819 bp Length : 3462 bp Strand : - Note : identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348 DNA sequence : ATGCCCCGGTTTAAGGTTTCTGCCGCCTGGCTGCTGGCGCTGGCGTGGATTTTGCTGCTGGTATGGATCTGGTGGAAAGG TCCGTCATGGACGCTCTACGAGCAGCGCTGGCTGGCCCCGCTGGCGAACCGCTGGCTGGCCACCGCCGCCTGGGGGTTGA TTGCGCTGGCGTGGCTGACCGTCCGGGTCATGAAGCGCCTGCAACTGCTGGAAAAACAGCAGCGCCAGCAACGGGACGAG GCGCAGGATCCGCTCAGCGTGGAACTGAACACCCAGCAACGCTATCTCGATCACTGGTTACTGCGTCTGCAACGCCATCT CGACAGCCGCCGCTATCTGTGGCAGCTACCGTGGTATATGGTCATTGGCCCGGCAGGAAGCGGTAAAACCACGCTGTTGC GCGAAGGGTATCCGTCCGACATCATTTATGCCCCGGAGGCGCTGCGGGGCGTGGAGCAGCGCCGGTATGTTATCCCGCAT GTGGGAAAACAGGCGGTGATTTTTGACGCCGACGGTCTCCTCTTTGAGCAACAGGATGCGGATATACTGCATCGCCGCCT GTGGACCCATATGCTGGACTGGCTGGCGCAAAAACGCGCCCGGCAGCCGCTGAACGGTCTGATACTGACGCTGGATCTGC CCGATCTGCTGACCGCCGACAAGCCACGCCGTGAGCACCTGTTGCAGATCCTGCGCGGACGTTTGCAGGATATACGCCAG CATCTTCACTGCCAGCTCCCCGTCTATGTGGTGCTGACCCGGCTGGATCTACTGCACGGTTTCGCCGCCCTGTTTCAGTC ACTGGACCGCAACGATCGCGACGCCATTCTTGGCGTCACCTTTACCCGTCATGCCCATGAAAATGACGACTGGCGTACAG AACTGAATGCCTTCTGGCAGGCATGGGGCGAACGGTTGAATAACGCCCTGCCGGAGCGGATGTTAGCCCCCGGCTCCCGC AGTTCCCTGTTCAGCTTTGTCCGCCAGATCCAGGGGGGCCGCGAGCCGCTGATCGCCCTGCTGAACGGGCTGCTGGACGG GGAAAATATGGATGTGATGCTGCGCGGCGTGTACCTCACCTCCTCCCTGCAACGCGGCCAGATAGACGATATTTTTATGC AGTCCGCCGCCCGTCAGTTCCGGCTGGGCAGCAGCCCGCTGACCGCCTGGCCGCTGGTGGACACGTTACCGTATTTCACC CGTAATCTGTTTCCGCAGACCTTACTGGCTGAGCCTAACCTCGCCAGTGAAAGCCGCGTCTGGCTGATGCAGTCCCGCCG CCGGTTGTCCGTGTTTTCCGCCACCGGCGGCATCGCCGCCCTGCTGCTGATTATCGGCTGGCATCACTATTACAATAACA ACTGGCGTTCCGGCATCACCGTACTGGAGCAGGCCAAAGCCTTTATGTCCGTGCCGCCACCGCAGGGTATGGACGAATAC GGCAACCTGCAACTGCCGTTACTTAACCCGGTGCGTGACGCCACGCTGGCCTACGGCGACTGGGGCGATCGCAGCCGCCT GGCCGATATGGGATTATATCAGGGCAGGCGTGTCGGCCCATATGTGGAGCAGACCTACCTGCAACTGCTGGAGCAGCGTT ACCTGCCCGCCCTGTTTAACGGCCTGGTCAAAGAGATGAATGCCGCGCCTGCGGAGAGCGAGGAGAAGCTTGCGGTATTG CGCGTTATCAGAATGCTGGAAGATAAAAGCGGACGCAGCGACGAGGTGGTGAAGCAGTATATGGCGAAACGCTGGAGTGA TAAATTTCACGGCCAGCGCGATATTCAGGCACAGCTGATGTCTCATCTGGACTACGCGCTGAAACACACCGACTGGCACG CGGAGCGTCAGGCAGGCGACGGCGACGCCATCAGCCGCTGGACGCCGTATGACAGTCCGGTCGTGGCGGCGCAGAAAGAG CTCAGCAAACTGCCCGTCTACCAGCGCGTTTACCAGAGTCTGAAAACGCGGGCGATGGGCGTGCTGCCCGCTGACCTGAA CCTGCGCGACCAGGTGGGCGCCACGTTTGATCAGGTCTTTACCTCCGGGGATGATAATAAGCTCATTGTTCCGCAGTTCC TCACCCGTTACGGTCTGCAAAGTTATTTTGTCAAACAGCGCGACGCGCTGATCGAACTGACGGCGATGGATTCCTGGGTG CTGAACCTGACCCGCAGCGTGAAATACAGCGACGCCGACCGGGCAGAAATCCAGCGCCAGCTCACTGAACAGTATCTCAG CGACTACACCGCCACCTGGCGAGCCGGAATGGACAACCTTAACGTGCGCAATTACGAATCCATTGCGCAACTGACCGGGG CGCTGGAGCAGATCATCAGCGGCGATCAGCCGCTCCAGCGGGCGCTGACGGCACTGCGCGACAACACGCAGCCTGCCGTT CTCTCTGAAAAACTGGATGACAAGGCGCTTCAGGAGGCGATGGCGGAGCCGGATTACCAGTTGCTGACCCGCCTGGGGCA TGAATTTGCCCCGGAAAACAGCACGCTGGCGATACAGAAAGACAAAGAAAACACCCTCCAGGCGGTCTATCAGCAACTGA CGGAGCTGCACCGTTACCTGCTGGCTATTCAGAACGCGCCGGTGCCGGGAAAATCAGCGCTGAAAGCGGTGCAGCTACGG CTGGATCAGAACAGCAGCGATCCTATTTTCGCCACCCGCCAGATGGCGAAAACCCTGCCTGCCCCGCTCAACCGCTGGGT GGGCAAGCTGGCGGATCAGGCCTGGCACGTGGTGATGGTGGAAGCGGTCCATTACATGGAGATTGACTGGCGTGACAACG TGGTGAAACCGTTTAACGAACAGCTTGCCAACAACTATCCGTTTAACCCGCGCTCACAGTCAGATGCGTCGCTGGATGCG TTTGAACGCTTCTTTAAACCGAATGGCGTACTGGATACCTTTTATCAGCAGAACCTGCGGCTGTTTATGGAAAACGATCT GAGTCTGGAGGACGGGGATAACAACGTGATTATTCGTGAGGATGTCCGGGAGCAACTGGATACCGCACAGGAAATCCGCG AGGCGTTTTTCAGCAGACAGAACGGCCTGGGCGCGCAGTTTGCCGTGGAAACCGTGTCGCTTTCCGGCAACAAACGGCGC AGCGTGCTGAACCTGGACGGGCAGTTAGTGGACTACAGCCAGGGCCGCAATTACACCGCCCATCTGGTCTGGCCGAACAA CATGCGTGAAGGCAATGAAAGTAAGCTGACGCTGATAGGCGTCAGTGGCGGCGCGCCGCGCAGCATCAGTTTCAGCGGAC CGTGGGCGCAGTTCAGGCTGTTCGGCGCCGGGCAACTTACCGGCGTTCAGGAGGGGACATTCAGCGTGCGCTTTAACGTG GACGGCGGAGCGATGGTGTACCGGGTACATACCGATACGGAAGATAACCCCTTCACCGGCGGGCTGTTCAGTCAGTTCCG GCTGCCGGATACCCTGTACTGA Protein sequence : MPRFKVSAAWLLALAWILLLVWIWWKGPSWTLYEQRWLAPLANRWLATAAWGLIALAWLTVRVMKRLQLLEKQQRQQRDE AQDPLSVELNTQQRYLDHWLLRLQRHLDSRRYLWQLPWYMVIGPAGSGKTTLLREGYPSDIIYAPEALRGVEQRRYVIPH VGKQAVIFDADGLLFEQQDADILHRRLWTHMLDWLAQKRARQPLNGLILTLDLPDLLTADKPRREHLLQILRGRLQDIRQ HLHCQLPVYVVLTRLDLLHGFAALFQSLDRNDRDAILGVTFTRHAHENDDWRTELNAFWQAWGERLNNALPERMLAPGSR SSLFSFVRQIQGGREPLIALLNGLLDGENMDVMLRGVYLTSSLQRGQIDDIFMQSAARQFRLGSSPLTAWPLVDTLPYFT RNLFPQTLLAEPNLASESRVWLMQSRRRLSVFSATGGIAALLLIIGWHHYYNNNWRSGITVLEQAKAFMSVPPPQGMDEY GNLQLPLLNPVRDATLAYGDWGDRSRLADMGLYQGRRVGPYVEQTYLQLLEQRYLPALFNGLVKEMNAAPAESEEKLAVL RVIRMLEDKSGRSDEVVKQYMAKRWSDKFHGQRDIQAQLMSHLDYALKHTDWHAERQAGDGDAISRWTPYDSPVVAAQKE LSKLPVYQRVYQSLKTRAMGVLPADLNLRDQVGATFDQVFTSGDDNKLIVPQFLTRYGLQSYFVKQRDALIELTAMDSWV LNLTRSVKYSDADRAEIQRQLTEQYLSDYTATWRAGMDNLNVRNYESIAQLTGALEQIISGDQPLQRALTALRDNTQPAV LSEKLDDKALQEAMAEPDYQLLTRLGHEFAPENSTLAIQKDKENTLQAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLR LDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVHYMEIDWRDNVVKPFNEQLANNYPFNPRSQSDASLDA FERFFKPNGVLDTFYQQNLRLFMENDLSLEDGDNNVIIREDVREQLDTAQEIREAFFSRQNGLGAQFAVETVSLSGNKRR SVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESKLTLIGVSGGAPRSISFSGPWAQFRLFGAGQLTGVQEGTFSVRFNV DGGAMVYRVHTDTEDNPFTGGLFSQFRLPDTLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 78 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 78 |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 57 |
