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Name : SSPA2406 (SSPA2406) Accession : YP_002143251.1 Strain : Salmonella enterica AKU12601 Genome accession: NC_011147 Putative virulence/resistance : Unknown Product : capsid portal protein Function : - COG functional category : R : General function prediction only COG ID : COG5518 EC number : - Position : 2678738 - 2679781 bp Length : 1044 bp Strand : + Note : similar to Salmonella typhi CT18 probable capsid portal protein DNA sequence : ATGAGTGAACACGACGCCCTGACCAGCACCGCGCCAGTGCAGGAGGCCGAACAGCAGAAGAATACAACTCACGCCGAAGC GTTCAGCTTTGGCGATCCGATCCCGGTACTGGACCGCCGCGAACTGCTGGACTATGTGGAATGCGTACAGATGGACAGAT GGTATGAGCCGCCAGTAAGCTTTGACGGGCTGGCGCGAACCTACCGCGCCGCTGTGCATCACAGCTCACCGATAGCGGTT AAGCGTGACATTCTCAGCAGTACGTACATCCCGCACCGCCTGCTCAGCCAGCAGGCTTTTGCCCGTTTCGTCCAAGATTA TCTGGTGTTCGGTAACGCCTATCTGGAAAAGCGCACCAACCGGCTCGGCGGCGTTCTCTCACTGGAGCCAGCACTGGCGA AGTACACACGCCGTGGCTTGGACCTCGACACCTACTGGTTTGTGCAGTACGACCTGACCACGCAGCCCTATGAATTTACA CAGGGCAACATCTTTCACTTTATGGAGCCGGATATTAACCAAGAGATTTACGGGCTGCCCGGCTATCTCTCCGCCATTCC GTCAACCCTGCTCAACGAGTCCGCAACGCTGTTCCGCCGGAAGTATTACATCAACGGCAGCCATGCGGGGTTCATCATGT ATATGACCGATGCAGCACAGAATCAGGAGGACGTGAACAATATCCGCCAGGCAATGAAAAGCGCCAAAGGGCCGGGCAAC TTCCGCAACCTGTTTATGTACTCGCCCAATGGTAAAAAGGACGGCATCCAGATCATCCCGTTGTCGGAAGTTGCGGCAAA GGATGAGTTTCTTAACATCAAGAACGTTAGCCGCGATGACATGATGGCAGCGCACCGCGTGCCACCGCAGATGATGGGCA TCATCCCCAACAATACCGGCGGCTTTGGTGATGTGGAAAAGGCCAGCCGCGTGTTTGTACGAAATGAATTAATACACCTT CAAGAAAGGATTAAAGAACTCAATGAATGGTTAGGGGATGAAGTCATTAGATTTGCGAAATATACACTCGACGACATAAG CTAA Protein sequence : MSEHDALTSTAPVQEAEQQKNTTHAEAFSFGDPIPVLDRRELLDYVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIAV KRDILSSTYIPHRLLSQQAFARFVQDYLVFGNAYLEKRTNRLGGVLSLEPALAKYTRRGLDLDTYWFVQYDLTTQPYEFT QGNIFHFMEPDINQEIYGLPGYLSAIPSTLLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNNIRQAMKSAKGPGN FRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRNELIHL QERIKELNEWLGDEVIRFAKYTLDDIS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY4628 | NP_458710.1 | probable capsid portal protein | Not tested | SPI-7 | Protein | 7e-163 | 99 |
| t4321 | NP_807917.1 | capsid portal protein | Not tested | SPI-7 | Protein | 7e-163 | 99 |
| unnamed | ABR13463.1 | predicted capsid packaging protein | Not tested | PAGI-6 | Protein | 3e-90 | 55 |
