Gene Information

Name : SSPA2025 (SSPA2025)
Accession : YP_002142862.1
Strain : Salmonella enterica AKU12601
Genome accession: NC_011147
Putative virulence/resistance : Virulence
Product : outer membrane usher protein FimD
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 2261090 - 2263702 bp
Length : 2613 bp
Strand : -
Note : similar to Salmonella typhi CT18 outer membrane usher protein FimD precursor

DNA sequence :
ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAACGGCGTGGCGCTGTCGGTGCTGGC
AGCTCTGTGTCCGTTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG
ATTTATCTCGCTTTGAAAAAGGTTATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA
GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGTGCCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC
GGAGTGGATTAAACGGCTGGGCGTGAATACTGCGGTGTTCCCTGTCTCAGATAAAGGCGTCGATACCTCGTGTATTCACC
TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA
TTGCTCAACAGCGCGCGTGGCTATATTCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT
TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGCGGTTTGAACTATGGCCCCTGGCGGCTGC
GTAATAACGGAGCCTGGAACTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG
CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT
TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTCAGAGGGATCG
CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAACTATGTGTCGCCGGGCGCGTTTGCG
ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA
CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA
GCGGCAATAGTCAGCAGTCTTCGCCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC
GGCGGTACGCAACTTGCCGATCGTTACCGTGCTGTGGTGGTCGGGGCGGGGCAAAATTTGGGTGACTGGGGGGCCGTGTC
GGTCGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA
AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACACGCGGATTTTACACCCTGGATGAT
GTGGCATACCGTAGCATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG
CTACCACAATCTCCGTTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAACCTGGGGGATTACGGGTCACTGT
ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG
CAAGACATAAGTTATTCGCTGTCATGGTCGTGGAACGAGTCGGTGGGGATCTCAGGCGCCGATCGCATTCTGGCATTCAA
TATGTCCGCTCCGTTTAGCGTTCTGACCGGACGGCGCTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA
ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGAGCGGCGTGGGCGGCACGCTTCTGGAAGGACGTAATCTGAGC
TACAGCGTGACGCAAGGGCGTAGCAGTACCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC
GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATGCGG
ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA
AACCAGACCGGCGTGAAAACGGACTGGCGGGGTTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC
GTTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCGCTGG
TGCGGGCCGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC
GCGATAGTACGAGAAACCGCCAGCGGTATTACCAGTATGGTCGGCGATGACGGGCAAATTTATCTGAGCGGCTTGCCGCT
AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGAATAGCC
TGAAGCAGGCGATTACGATAGTCAGCGCAACCTGTATCCGTCCGGCGTCATAA

Protein sequence :
MKKTTWFAGRFPGYVSPLNGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGYHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAVFPVSDKGVDTSCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQNYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QDISYSLSWSWNESVGISGADRILAFNMSAPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQSGVGGTLLEGRNLS
YSVTQGRSSTNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAENSLKQAITIVSATCIRPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 49
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 3e-178 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA2025 YP_002142862.1 outer membrane usher protein FimD VFG0446 Protein 0.0 99
SSPA2025 YP_002142862.1 outer membrane usher protein FimD VFG0876 Protein 0.0 48
SSPA2025 YP_002142862.1 outer membrane usher protein FimD VFG1645 Protein 2e-178 47
SSPA2025 YP_002142862.1 outer membrane usher protein FimD VFG0912 Protein 4e-178 47
SSPA2025 YP_002142862.1 outer membrane usher protein FimD VFG0454 Protein 4e-153 41