Gene Information

Name : SSPA2002 (SSPA2002)
Accession : YP_002142841.1
Strain : Salmonella enterica AKU12601
Genome accession: NC_011147
Putative virulence/resistance : Resistance
Product : transcriptional activator RamA
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 2238320 - 2238661 bp
Length : 342 bp
Strand : -
Note : similar to Salmonella typhi CT18 transcriptional activator RamA

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGGGGCGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCGCGACACCGACCAGAAGGTGTATGATATTTGTCTCAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAAGCATGGCCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYVRERKLKLAARDLRDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKEKHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-19 49
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-17 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-17 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA2002 YP_002142841.1 transcriptional activator RamA CP001138.1.gene612.p Protein 4e-44 100
SSPA2002 YP_002142841.1 transcriptional activator RamA CP001918.1.gene327.p Protein 1e-19 49
SSPA2002 YP_002142841.1 transcriptional activator RamA CP000647.1.gene4499. Protein 3e-19 49
SSPA2002 YP_002142841.1 transcriptional activator RamA CP001138.1.gene4488. Protein 2e-19 49
SSPA2002 YP_002142841.1 transcriptional activator RamA NC_010558.1.6276025. Protein 5e-18 47
SSPA2002 YP_002142841.1 transcriptional activator RamA BAC0371 Protein 2e-18 46
SSPA2002 YP_002142841.1 transcriptional activator RamA NC_002695.1.914293.p Protein 2e-18 46
SSPA2002 YP_002142841.1 transcriptional activator RamA CP000647.1.gene1624. Protein 2e-18 46
SSPA2002 YP_002142841.1 transcriptional activator RamA CP000034.1.gene4505. Protein 4e-18 45
SSPA2002 YP_002142841.1 transcriptional activator RamA CP001918.1.gene2033. Protein 1e-18 45
SSPA2002 YP_002142841.1 transcriptional activator RamA BAC0560 Protein 8e-19 43
SSPA2002 YP_002142841.1 transcriptional activator RamA NC_002695.1.917339.p Protein 8e-19 43
SSPA2002 YP_002142841.1 transcriptional activator RamA CP000034.1.gene1596. Protein 7e-19 43
SSPA2002 YP_002142841.1 transcriptional activator RamA CP001138.1.gene1637. Protein 8e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA2002 YP_002142841.1 transcriptional activator RamA VFG0585 Protein 2e-19 49
SSPA2002 YP_002142841.1 transcriptional activator RamA VFG1038 Protein 5e-18 47