Gene Information

Name : SSPA1348 (SSPA1348)
Accession : YP_002142187.1
Strain : Salmonella enterica AKU12601
Genome accession: NC_011147
Putative virulence/resistance : Virulence
Product : pathogenicity island protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 1519520 - 1519948 bp
Length : 429 bp
Strand : -
Note : similar to Salmonella typhi CT18 pathogenicity island protein

DNA sequence : 
ATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGTTTATGC
CAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGCTGGCTGGTGATGGCCCAGCCAT
GGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTCTATGGA
CATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGAACCCGG
GTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGCTATGCGGATGCCTCATGGAGTGAGATTCGCCAGAATGCGC
AAAAAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYG
HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 5e-62 100
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 5e-62 100
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 2e-61 99
sscB AAC28884.1 SscB Virulence SPI-2 Protein 2e-61 99
sscB CAA12190.1 SscB Virulence SPI-2 Protein 2e-61 99
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 2e-61 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA1348 YP_002142187.1 pathogenicity island protein VFG0504 Protein 7e-62 99