Gene Information

Name : SSPA1340 (SSPA1340)
Accession : YP_002142179.1
Strain : Salmonella enterica AKU12601
Genome accession: NC_011147
Putative virulence/resistance : Virulence
Product : pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1515216 - 1515890 bp
Length : 675 bp
Strand : -
Note : similar to Salmonella typhi CT18 pathogenicity island protein

DNA sequence : 
ATGAGTTTTACTTCACTTCCTCTGACGGAAATTAACCATAAGCTACCCGCTCGAAATATTATTGAGTCACAGTGGATAAC
ATTACAATTAACTTTATTTGCGCAAGAGCAACAAGCTAAGAGAGTTTCACATGCTATTGTGAGCTCCGCTTACCGTAAGG
CTGAAAAAATCATCCGAGACGCCTATCGTTATCAGCGTGAACAGAAAGTTGAGCAGCAACAAGAACTAGCGTGCTTGCGT
AAAAATACGCTGGAAAAAATGGAAGTGGAATGGCTGGAACAGCATGTAAAACATTTACAAGAAGATGAAAATCAATTTCG
TTCATTGGTCGATCACGCAGCGCATCATATTAAAAATAGTATAGAACAGGTTCTGTTGGCCTGGTTCGACCAACAGTCGG
TAGACAGTGTTATGTGCCATCGTCTGGCACGCCAGGCCACGGCTATGGCGGAAGAGGGAGCGCTTTATTTGCGTATTCAT
CCTGAAAAAGAGGCATTGATGCGTGAAACTTTTGGCAAGCGGTTTACGTTGATTATCGAGCCTGGTTTCTCTCCCGATCA
GGCTGAACTTTCCTCAATACGATATGCCGTTGAGTTTTCACTTTCTCGTCATTTCAACGCGTTACTGAAATGGTTACGTA
ATGGTGAAGATAAAAGAGGTCGCGATGAATATTAA

Protein sequence : 
MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLR
KNTLEKMEVEWLEQHVKHLQEDENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH
PEKEALMRETFGKRFTLIIEPGFSPDQAELSSIRYAVEFSLSRHFNALLKWLRNGEDKRGRDEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1709 NP_456117.1 putative pathogenicity island protein Virulence SPI-2 Protein 4e-99 99
t1279 NP_805082.1 pathogenicity island protein Not tested SPI-2 Protein 4e-99 99
ssaK NP_460376.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-101 99
ssaK CAA70533.1 secretion system apparatus Virulence SPI-2 Protein 1e-100 99
ssaK YP_216419.1 secretion system apparatus protein SsaK Virulence SPI-2 Protein 5e-98 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA1340 YP_002142179.1 pathogenicity island protein VFG0511 Protein 7e-102 99