Gene Information

Name : lolD-1 (Gbem_0838)
Accession : YP_002137657.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Resistance
Product : lipoprotein release ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 991399 - 992073 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence :
ATGAGTAGCCTTCTCGAGGTGAAGAACCTCTACAAGTCCTACGGCGAGGCCGCGGCCAAGGTCGAGGTGCTGAAGGGAAT
CGATCTCTGCGTGGAATCGGGCGACACCATAGCCCTGGTGGGCCCTTCCGGCGCCGGCAAGAGCACGCTCTTACACATCA
TGGGGACCATCGACCGCCCCACAAGCGGCGAGGTGCTCTTCGACGGGGAGCCGGTCTTCGCGCTCGCGGACCAGCCGCTC
GCCTCCTTTCGGAACCGCTCCATCGGCTTCGTGTTCCAGTTCCACCATCTCCTCCCCGAGTTCACGGCGCTGGAGAACGT
GATGATGCCGCTTTTGATCGGCGGCGAGAAGAGGTCCAAGGTCGAAGGGCGCGCCCGCGAGCTTTTGCACGACGTGGGGC
TGGCCCATCGGGTGACCCACCGGCCGGGTGAGCTGTCCGGGGGGGAGCAGCAGCGCGTCGCCATCGCGCGGGCGCTGGTG
CGGCAGCCCAGGCTCCTTCTGGCGGACGAGCCTACCGGGAACCTCGATATGAAGACCAGCCACGAGGTGCACGAACTGCT
CTACTCGATACAGCGCAGTACCGGCATCACGCTGGTGATCGTCACCCACAACGAGCAGCTGGCGGCGGGGATGAACCGCA
CCATCCGCGTGGTGGACGGCAGGATCGTGGAATAG

Protein sequence :
MSSLLEVKNLYKSYGEAAAKVEVLKGIDLCVESGDTIALVGPSGAGKSTLLHIMGTIDRPTSGEVLFDGEPVFALADQPL
ASFRNRSIGFVFQFHHLLPEFTALENVMMPLLIGGEKRSKVEGRARELLHDVGLAHRVTHRPGELSGGEQQRVAIARALV
RQPRLLLADEPTGNLDMKTSHEVHELLYSIQRSTGITLVIVTHNEQLAAGMNRTIRVVDGRIVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-25 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD-1 YP_002137657.1 lipoprotein release ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 5e-42 47
lolD-1 YP_002137657.1 lipoprotein release ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-41 46
lolD-1 YP_002137657.1 lipoprotein release ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 3e-35 44
lolD-1 YP_002137657.1 lipoprotein release ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 5e-38 42