Gene Information

Name : lolD-2 (Gbem_0437)
Accession : YP_002137262.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Resistance
Product : lipoprotein release ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 520670 - 521359 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGCAGCTTCGTGATGTGGTCAAATCGTACGACGGGAAATCCACGGTGACCGCACTTGCCGGTATCACCCTTTCCAT
CGCCCCCGGCGAGATGGTGGCCATCATGGGCCCCTCCGGCTCGGGGAAATCAACCCTCTTGAACCTGATGGGGGGGCTCG
ACGTCCCGACCTCGGGGCAGCTCCTGGTCGCCGGGAAGGATCTGGCCCGGGAAAGCGAGAAAGCCCGCTCGCTCTTTCGC
CGCAACAGCGTCTCCTACATCTTCCAGGCCTACCACCTGATGCCGACGCTCAGGGTGCGGCAGAACGTGGCGCTCCCGCT
GCAGCTGGCCGGCGTATCCGCGAAGAAGGCGGCCCTGCAGGTGGAGCGGGTCCTCGCCGAAGTGGGGCTGGAAAAACGCG
GGGACCATCTCCCGGACGAACTCTCCGGCGGCGAGAGGCAGCGCGTCGCCATCGCCCGCGCCTTGGCGACCGACGCCCCC
CTGCTCCTCGCGGACGAGCCCACCGGGAACCTCGACAGCGCGCGCGGCAGGGAGATCCTCGCTTTGCTCCGCTCCATCCA
CGCCAACAGGAACACCACCATCGTCATGGTCACCCATGACCACGACGCCGCCTCCGTCTGCGACCGGTTGATCAGGCTGC
GCGACGGGAGGGTGGAGGACGACGGCGTCGTCATCGGAGGTGGGAGATGA

Protein sequence : 
MLQLRDVVKSYDGKSTVTALAGITLSIAPGEMVAIMGPSGSGKSTLLNLMGGLDVPTSGQLLVAGKDLARESEKARSLFR
RNSVSYIFQAYHLMPTLRVRQNVALPLQLAGVSAKKAALQVERVLAEVGLEKRGDHLPDELSGGERQRVAIARALATDAP
LLLADEPTGNLDSARGREILALLRSIHANRNTTIVMVTHDHDAASVCDRLIRLRDGRVEDDGVVIGGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-26 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-27 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 1e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD-2 YP_002137262.1 lipoprotein release ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-33 47
lolD-2 YP_002137262.1 lipoprotein release ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-41 46
lolD-2 YP_002137262.1 lipoprotein release ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-37 45
lolD-2 YP_002137262.1 lipoprotein release ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 5e-39 44