Gene Information

Name : Gbem_3622 (Gbem_3622)
Accession : YP_002140410.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : metal ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 4143273 - 4144040 bp
Length : 768 bp
Strand : -
Note : -

DNA sequence : 
ATGAACAACGGTAAAGGGATTCCCGCCATCGAGGTGCGCCACCTGACCGTCTCTTACGGCGCGCGCCCAGCGCTTCTCGA
CGTGTCGGTCAGGATCGAAAAGGATCAACTGGTAGGTGTGATCGGCCCCAACGGATCGGGGAAGTCCACGCTGATCAAGG
CCATACTCGGTTTCGAGAAGCCGGACGTGGGGGAGATCCTCATCGGCGGCGAGGATGTGCAGAAGGCCAAGGGGAAGGTG
GCCTACGTCCCGCAGCGCGGCGCCGTGGACTGGGATTTCCCCATCACCGTCCGGGAGGTGGCGCTCATGGGGCGCTACCA
GCACGTCCCCTGGTACCGCTCCCCTTCCGCGGCGGACCGCGAGGCGGCACTGGAGGCGCTCTCCATGGTCCGCATGTCGG
ACTTCGCCGAGCGCCAGATAGGGCAGCTCTCGGGCGGGCAGCAGCAGCGGGTGTTCCTGGCGCGGGCGCTGGCGCAGGGT
TCCGACATCCTGCTCCTGGACGAGCCTTTCGCCGGGGTGGACGCTGCCACCGAGCGGGCCATACTCGACGTCCTGGAACG
GGCCAAGGCGGCCGGGAAGACCCTGGTCGTGGTGCACCACGATCTCGCCACCGCGGCCGAGTACTTCGACAACCTGGTTC
TCTTGAAGCAGCGGCTCTACGCCTTCGGACCTCCCGCCGCCGTGTTGCAGGAGGAACTCTTGAGCCAGGTCTACGAGGGG
CGCCTCAGGGTCTTCACCGACCTGATGGCCAAGGAGGGGGGGCGATGA

Protein sequence : 
MNNGKGIPAIEVRHLTVSYGARPALLDVSVRIEKDQLVGVIGPNGSGKSTLIKAILGFEKPDVGEILIGGEDVQKAKGKV
AYVPQRGAVDWDFPITVREVALMGRYQHVPWYRSPSAADREAALEALSMVRMSDFAERQIGQLSGGQQQRVFLARALAQG
SDILLLDEPFAGVDAATERAILDVLERAKAAGKTLVVVHHDLATAAEYFDNLVLLKQRLYAFGPPAAVLQEELLSQVYEG
RLRVFTDLMAKEGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-47 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-47 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-46 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-46 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-47 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-45 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-45 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_3622 YP_002140410.1 metal ABC transporter ATP-binding protein BAC0400 Protein 3e-52 52
Gbem_3622 YP_002140410.1 metal ABC transporter ATP-binding protein BAC0350 Protein 5e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_3622 YP_002140410.1 metal ABC transporter ATP-binding protein VFG0526 Protein 5e-47 44