Gene Information

Name : Gbem_2993 (Gbem_2993)
Accession : YP_002139792.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Unknown
Product : bacteriophage P4-type integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3459586 - 3460821 bp
Length : 1236 bp
Strand : -
Note : -

DNA sequence :
ATGCCACTAACTGATATTGCTGTGAAATCTGCAAAGCCAAAGGAGAAGGACTACAAGCTATCAGACGGTGACGGCATGTA
CCTTTTAGTAACTGCGGGGGGCGGTAAGAGATGGCGGCTTAAGTACCGCTTCTTAGGCAAAGAAAAATTACTGGCTCTTG
GCACCTACCCCGACATATCACTTTCTGAAGCTCGAAACAAAAGGCATGAGGCGCGAAAACAGCTAGGGCATGGAATCGAC
CCCGGCGCAGAGCGCAAGGCGCTGAAAGAGGTACAGGCACAAGAAGCCGCAGAAATCAAAAACAGCTTCAAGCTGGTTGC
TTGCGAATGGCACAGCAAGTTTTCTGGAACATGGTCAAATGGGCATGCAGGAACGATCATGGATAGGCTGACACGTGATG
TTTTCCCTTGGCTCGGTGATAAGCCGATATGTGAGGTAGAGCCGGTTGATATTTTGGGTGTGCTACGGCGTGTCGAAAGC
AGGGGAGCGCTTGAAACGGCGCATAGAATCAGAACCATATGCGGCCAGGTTATGCGCTATGCCGTTGCAACCGGAAGGGC
TAAACGAGATTCTGCGGCTGATTTGCGTGGAGCATTGCCACCAGCTAACGCGAAGCATCATGCTTCTATGACAGATCCTA
AGGAAGTAGCCGAACTCCTAAGAGCGATTGACGGTTTTAAGGGTACATTTCACGTCAAATGTGCCTTGCAGCTTGCGCCG
TTGTTGTTTGTTAGACCGGGAGAGCTACGGCAGATGGAATGGGCCGAGCTTGATCTTGATGGGCGAATGTGGAATATCCC
CGGCGTAAAAATGAAAATGGGGCAGCCACACATTGTGCCACTGGCACATCAAGCGGCTGAAATTCTCGGTCAATTAAAAC
CGTTAACGGGTGCTGGCAGGTACGTGTTCCCTTGCCATCGCTCACCGCTTCGGCCTATGACAAACAATGCCGTTAATGCA
GCGCTTCGCCGCATGGGGTACACCTCGGATGAAATGACCGGCCACGGATTCAGAGCAATGGCGCGAACTATTCTTGACGA
GGTTTTACAGGTACGGCCTGATTTCATCGAGCACCAGCTTGCACATGCCGTTAAAGATCCTAACGGGCGTGCTTACAATC
GGACGGCTCACCTAGCCGAGCGGCGGAAGATGATGCAGACGTGGGCGGATTATCTCGATGGTTTGAAGAAGGGGGCAAAG
GTCATACCGATGACGAGAGCAACCGCAGCCGAATAA

Protein sequence :
MPLTDIAVKSAKPKEKDYKLSDGDGMYLLVTAGGGKRWRLKYRFLGKEKLLALGTYPDISLSEARNKRHEARKQLGHGID
PGAERKALKEVQAQEAAEIKNSFKLVACEWHSKFSGTWSNGHAGTIMDRLTRDVFPWLGDKPICEVEPVDILGVLRRVES
RGALETAHRIRTICGQVMRYAVATGRAKRDSAADLRGALPPANAKHHASMTDPKEVAELLRAIDGFKGTFHVKCALQLAP
LLFVRPGELRQMEWAELDLDGRMWNIPGVKMKMGQPHIVPLAHQAAEILGQLKPLTGAGRYVFPCHRSPLRPMTNNAVNA
ALRRMGYTSDEMTGHGFRAMARTILDEVLQVRPDFIEHQLAHAVKDPNGRAYNRTAHLAERRKMMQTWADYLDGLKKGAK
VIPMTRATAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-76 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-80 44
int AAD44730.1 Int Not tested SHI-2 Protein 4e-81 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-80 43
int ACU09430.1 integrase Not tested LEE Protein 2e-80 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-80 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-80 43
int CAC39282.1 integrase Not tested LPA Protein 2e-81 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-81 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-79 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-79 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-79 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-71 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-72 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-72 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-72 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-73 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-72 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-73 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-71 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-72 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-71 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-73 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-72 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-72 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 7e-72 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-72 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 7e-72 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-72 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_2993 YP_002139792.1 bacteriophage P4-type integrase VFG0783 Protein 9e-81 43
Gbem_2993 YP_002139792.1 bacteriophage P4-type integrase VFG0598 Protein 2e-79 43
Gbem_2993 YP_002139792.1 bacteriophage P4-type integrase VFG0626 Protein 3e-73 41
Gbem_2993 YP_002139792.1 bacteriophage P4-type integrase VFG1693 Protein 2e-72 41