Gene Information

Name : phoB-2 (Gbem_2952)
Accession : YP_002139751.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : winged-helix phosphate transcriptional response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3420402 - 3421079 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGACAGTACTGGTGATAGAGGACGAGAAGGACCTGGCGGATCTGGTGGCTTTCCACCTGGAGCAGGAGGGATATTG
CTGCCTCGTGGCCCACGACGGCGCCACCGGGCTCGCGGAGGCGCGCCGCTGCAAGCCTGACCTGATACTGCTCGACCTGA
TGCTCCCGGGGATGATGGGGACGGAGGTCTGCCGCACCTTGAAGGGGGCGGAACTTACCGCGGGCATTCCTGTCATCATG
CTCACCGCTCGCGGGGAGGAGATCGACCGCGTGGTGGGGTTCGAGATGGGGGCCGACGACTACGTGGTGAAGCCTTTTTC
CACCCGGGAGCTGATGCTTAGGGTGCGGGCCGTCTTGAGGAGAAAGCTTCCCGCTTCCGAAGTGGCCACCATCTCGCTGG
GGGCGCTACTAATCGACGTGGAGCGCCACCTGGTCCGGGTAGCCGGGGAGGAGGTACAGCTCACCTCTACGGAATTCAAG
CTCCTGATGAACCTGGCGGAGCGGATCGGACGCGTGCAGAGCAGGGAACTTCTCTTGCAAAACGTCTGGGGATACAGCTA
CCTGGGCGACACGCGCACCGTGGACACGCACATGACCCGCCTGCGCACGAAGCTTGGAGCGGCGGGGGAGTTGATCAAGA
CTGTGCGCGGCTTCGGCTACAAACTGGAGGAGTCATGA

Protein sequence : 
MPTVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMGTEVCRTLKGAELTAGIPVIM
LTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKLPASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFK
LLMNLAERIGRVQSRELLLQNVWGYSYLGDTRTVDTHMTRLRTKLGAAGELIKTVRGFGYKLEES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-27 42
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002952.2859905.p0 Protein 2e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002951.3237708.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002758.1121668.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_009641.5332272.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_013450.8614421.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_007793.3914279.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_003923.1003749.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_007622.3794472.p0 Protein 2e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002745.1124361.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_009782.5559369.p0 Protein 3e-45 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator AE000516.2.gene3505. Protein 2e-39 45
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_012469.1.7685629. Protein 2e-43 44
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator CP001918.1.gene5135. Protein 6e-25 43
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene2815. Protein 1e-44 43
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator AE015929.1.gene1106. Protein 5e-34 42
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator BAC0197 Protein 4e-28 42
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_003923.1003417.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_013450.8614146.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002951.3238224.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_007793.3914065.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002758.1121390.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_010079.5776364.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002952.2859858.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_007622.3794948.p0 Protein 3e-37 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator CP000675.2.gene1535. Protein 6e-34 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator HE999704.1.gene1528. Protein 6e-33 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator BAC0125 Protein 8e-29 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator CP000034.1.gene2186. Protein 3e-32 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator BAC0039 Protein 3e-32 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator BAC0596 Protein 2e-32 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator NC_002695.1.916589.p Protein 3e-32 41
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator CP001138.1.gene2239. Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator VFG1389 Protein 5e-31 44
phoB-2 YP_002139751.1 winged-helix phosphate transcriptional response regulator VFG0596 Protein 3e-29 42